New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4990792	22 (1.360)	4 (0.260)	4/244	NT	15.7%	coding (388/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990803	22 (1.430)					coding (377/1242 nt)	PP_4399	glutamine synthetase

GTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGA  >  NC_002947/4990655‑4990951                                                                                                                                                     |                                                                                                                                                     gTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATCGCCCAGCTCGCGGCg                                                                                                                                                     <  1:272756‑M2/150‑2 (MQ=255)       ctcGAACTGGCTGACACCCATTTCGTGCATGAAGGCGTAACGTGGCAGGTCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATc                                                                                                                                               <  2:272756/150‑1 (MQ=255)             cTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCAATTTCTCCAGCTCGCGGCGGCCATCGCTGcc                                                                                                                                         <  1:303666/150‑1 (MQ=255)                        ccATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCa                                                                                                                              >  1:52903/1‑150 (MQ=255)                           tttCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGACATCGCTGCCTACAGGCGGCAGGa                                                                                                                           >  2:214118/1‑150 (MQ=255)                               gTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACgg                                                                                                                       >  2:260367/1‑150 (MQ=255)                                    tGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTtgct                                                                                                                  >  2:239479/1‑150 (MQ=255)                                     gAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTtgctg                                                                                                                 >  1:247069/1‑150 (MQ=255)                                        ggggtCAGGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACGTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCgg                                                                                                              <  1:137588/147‑1 (MQ=255)                                                     aGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTgggg                                                                                                 <  1:239479/150‑1 (MQ=255)                                                          gAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAg                                                                                                                                    >  1:389854/1‑110 (MQ=255)                                                          gAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAg                                                                                                                                    <  2:389854/110‑1 (MQ=255)                                                            gcgcGGCCATGCAGTGGTACACCTCCTTGAAGGACGGGCGCAGGCCGGTGTTGGAACTGACACTGAACGCCGAATGGGCCAGCTCGCGGCGGCCAGCGCTGGCTACAGGCGGCAGGAACGGTTGCTTCGGGTCGGTGTTGGGGGCAAAGa                                                                                          <  2:187934/150‑1 (MQ=255)                                                            gcgcGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGa                                                                                          <  1:367607/150‑1 (MQ=255)                                                                             tACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCg                                                                         >  2:384852/1‑150 (MQ=255)                                                                                 gaagctTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTg                                                                     >  1:349765/5‑150 (MQ=255)                                                                                   tcctTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGcc                                                                   <  1:260367/150‑1 (MQ=255)                                                                                            aaCGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGgc                                                          <  1:384852/150‑1 (MQ=255)                                                                                            aaCGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGgc                                                          <  1:214118/150‑1 (MQ=255)                                                                                                ggCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCa                                                      <  2:399261/150‑1 (MQ=255)                                                                                                                       acacTGAACGCCGAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgtt                                                                                                       <  2:284072‑M2/78‑48 (MQ=255)                                                                                                                       acacTGAACGCCGAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgtt                                                                                                       >  1:284072‑M2/1‑31 (MQ=255)                                                                                                                         acTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCggg                                 <  2:234480/146‑1 (MQ=255)                                                                                                                         acTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCggg                                 >  1:234480/1‑146 (MQ=255)                                                                                                                             aaCGCCGAATGGCCGAGCTCGCGGCGGCCATCGCTGCTTACAGGCGGCAGCAACGGTTGCTGCGGGTCGGTGTCGGGGGCAAAGACGAAGCACTCCCGCTCGGTTGCCACTCCCGGTGGCAGGCCCGGTGCCGCATAGCGGGCTATCACg                         <  2:24162/150‑1 (MQ=255)                                                                                                                                   gAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgttcttcaaggaggtgtaccactgcatgg                                                                             >  2:157464‑M2/1‑19 (MQ=255)                                                                                                                                   gAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgttcttcaaggaggtgtaccactgcatgg                                                                             <  1:157464‑M2/92‑74 (MQ=255)                                                                                                                                       ggCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCt               <  1:304313/150‑1 (MQ=255)                                                                                                                                                    gcggcCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGa  <  2:247069/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGA  >  NC_002947/4990655‑4990951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.