New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5238687	10 (0.620)	4 (0.250)	4/250	NT	26.0%	coding (151/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5238796	13 (0.820)					intergenic (+56/‑225)	PP_5701/PP_4616	hypothetical protein/hypothetical protein

TGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGGCGCTCCCGCAGC  >  NC_002947/5238647‑5238907                                                                                                                                                      |                                                                                                                tGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCACTCCCACAGCGGGAAACACAGAAGTCAAGACTTGCACAGTACCTATGGGAGCGGGCGTGCGCGCGAAAGGGCGGGCCCTg                                                                                                                 >  1:53049/1‑150 (MQ=255)  gAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGc                                                                                                                >  1:403400‑M2/1‑149 (MQ=255)                                             ggccggccTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCa                                                                     >  1:107749/1‑150 (MQ=255)                                              gccggccTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCAt                                                                    <  2:107749/150‑1 (MQ=255)                                                  gccTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTcgc                                                                >  1:156634/1‑150 (MQ=255)                                                              gCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGccggcacgttaaccagccttagtgcgaagttcctgggctcagcggacatctgcacctgaac                                                    <  1:21464‑M2/150‑62 (MQ=255)                                                                    ccGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGccggcacgttaaccagccttagtgcgaagttcctgggctcagcggacatctgcacctgaaccagcgc                                              <  1:17459‑M2/150‑68 (MQ=255)                                                                      gCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACaa                                            <  1:37870/150‑1 (MQ=255)                                                                      gCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACaa                                            <  2:156634/150‑1 (MQ=255)                                                                            acaGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGccggcacgttaaccagccttagtgcgaagttcctgggctcagcggacatctgcacctgaaccagcgccgactcaa                                      >  2:17459‑M2/1‑75 (MQ=255)                                                                                            tagtCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCt                      >  1:238052/1‑150 (MQ=255)                                                                                            aagtCAAGACTTGCACAGTACCTGTGGGACAGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCt                      <  2:177049/149‑1 (MQ=255)                                                                                                      ttGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGccggcacgttaaccagccttagtgcgaagttcctgggctcagcggacatctgcacctgaaccagcgccgactcaagaagaggccgcagcgcctccagttca            >  2:21464‑M2/1‑49 (MQ=255)                                                                                                      ttGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGgcg            >  1:325521/1‑150 (MQ=255)                                                                                                            aGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTCTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGGCGCTCCCg      >  1:250133/1‑150 (MQ=255)                                                                                                              tACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGGCGCTCCCGCa    >  1:148021/1‑150 (MQ=255)                                                                                                                ccTGTGGGAGCGGGCGTGTCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCTACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGGCGCTCCCGCAgc  <  2:411188/150‑1 (MQ=255)                                                                                                                             gCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTc                        <  1:280536/115‑1 (MQ=255)                                                                                                                             gCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTc                        >  2:280536/1‑115 (MQ=255)                                                                                                                                                      |                                                                                                                TGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTCGCGGGCAAGCCTGTGCCTACAACTGTTTCGGGCAAATGGTTCCTGGCAAAGGCGCTCCCGCAGC  >  NC_002947/5238647‑5238907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.