| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6161965 = | 24 (1.480) | 3 (0.190) | 3/244 | NT | 12.3% | intergenic (+5/+18) | PP_5403/PP_5404 | hypothetical protein/TnsC‑like transposition protein |
| ? | NC_002947 | 6161996 = | 20 (1.300) | coding (1334/1347 nt) | PP_5404 | TnsC‑like transposition protein | |||||
CTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGA > NC_002947/6161853‑6162141 | aagctctggccaaagcgccccgtcgtaaaccgcttccaaaggcgaccgacgaagacctagcactagccttccatcacaacgcggactcacaggccccgtccttaccccctaaAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAgggg > 1:388413‑M1/113‑150 (MQ=255) tCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAggggg > 2:87872/1‑150 (MQ=255) cATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACtgt < 1:87872/150‑1 (MQ=255) aaCCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCCTGCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAg < 2:416976/150‑1 (MQ=255) ccAACATGGTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGACTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGCCTGTGAGTc > 1:255125/1‑150 (MQ=255) aaCATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCcg > 1:245815/1‑150 (MQ=255) aCATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCcgc < 2:245815/150‑1 (MQ=255) aTGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGt > 1:37060/1‑150 (MQ=255) aTCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGc > 1:333645/1‑150 (MQ=255) actagccttccatcgatacgcggactcacagtccccgtccttaccccctaaAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAgg < 1:251241‑M1/36‑1 (MQ=255) actagccttccatcgatacgcggactcacagtccccgtccttaccccctaaAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAgg > 2:251241‑M1/52‑87 (MQ=255) ttCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCgtcggtcg > 2:283470/1‑150 (MQ=255) cTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACggg > 2:403363/1‑92 (MQ=255) cTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACggg < 1:403363/92‑1 (MQ=255) cGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGa > 2:40652/1‑150 (MQ=255) gCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGaa > 1:189539/1‑150 (MQ=255) gACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTacgac < 1:283470/150‑1 (MQ=255) tttttCCGTGCTGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGaa > 2:375349/1‑100 (MQ=255) tttttCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGaa < 1:375349/100‑1 (MQ=255) tCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGgcgc < 2:333645/150‑1 (MQ=255) ccGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCt < 2:37060/150‑1 (MQ=255) aCTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGc > 1:204376/1‑150 (MQ=255) tGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCtt > 2:366066/1‑150 (MQ=255) cccctaaaaagccgaagtagcatgtccagcttggctttTTAGGGGGTAAGGACGGGGCCTGTGAGTCCGCGTTGTGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCtt > 1:388413‑M2/39‑150 (MQ=255) cctaaaaagccgaagtagcatgtccagcttggctttTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGt > 2:251241‑M2/37‑87 (MQ=255) cctaaaaagccgaagtagcatgtccagcttggctttTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGt < 1:251241‑M2/51‑1 (MQ=255) AAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATc > 1:366066‑M1/1‑150 (MQ=255) ctttTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGa < 2:255125‑M2/146‑1 (MQ=255) | CTCAAGCAAGAGCGGCGCATAACCAACATGTTTGAAGGTGATCCACAGCAGCCCGAGGATGACTTCGGCCTCGCTTCCAGGGATGACTTTTTCCGTGATGGTCACTGATTTGAAAGCCAAGCTGGACATGCTACTTCGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGA > NC_002947/6161853‑6162141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |