Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4944057	4944061	5	2 [0]	[0] 2	PP_5673	D‑alanine‑‑D‑alanine ligase

AAGCTTCTAACGAAGCATATTGCAAGAGGACTTGGAATAAATGTCGCAAACTATCTTTACTCGAAAAACGGT  >  NC_002947/4944062‑4944133 |                                                                        aaGCTTCTAACGAAGCATATTGCAAGAGGACTTGGAATAAATGTCGCAAACTATCTTTACTCGAAAAACGGt  <  1:239626/72‑1 (MQ=255) aaGCTTCTAACGAAGCATATTGCAAGAGGACTTGGAATAAATGTCGCAAACTATCTTTACTCGAAAAACGGt  >  2:239626/1‑72 (MQ=255) |                                                                        AAGCTTCTAACGAAGCATATTGCAAGAGGACTTGGAATAAATGTCGCAAACTATCTTTACTCGAAAAACGGT  >  NC_002947/4944062‑4944133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑