| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,285,852 | A→T | 23.5% | I19N (ATT→AAT) | PP_2887 ← | catalase‑like peroxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,285,852 | 0 | A | T | 23.5% | 26.6 / 6.3 | 17 | I19N (ATT→AAT) | PP_2887 | catalase‑like peroxidase |
| Reads supporting (aligned to +/- strand): ref base A (5/8); new base T (2/2); total (7/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
CCTGGGTAATGCCCGGCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAGTGAAGGTGCCAGTACGACGTGTCAGAGAAAAAGTTATTCCCTGATCGGGAATAGAATTTG > NC_002947/3285729‑3285979 | ccTGGGTAATGCCCGGCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTggcc < 2:212069/150‑1 (MQ=255) cccGGCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCaa < 2:337821/150‑1 (MQ=255) cccGGCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCaa > 1:265048/1‑150 (MQ=255) gCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCATTggcggcgtgc > 1:225722/1‑116 (MQ=255) gCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCATTggcggcgtgc < 2:225722/120‑5 (MQ=255) ttCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAg < 1:230954/139‑1 (MQ=255) ttCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAg > 2:230954/1‑139 (MQ=255) aaGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTc > 1:426681/1‑150 (MQ=255) gtgtCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATc < 2:426681/150‑1 (MQ=255) tCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTc > 1:171831/1‑150 (MQ=255) gggatgatGCGCTGGGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTc < 2:171831/148‑1 (MQ=255) gcgcTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAg < 1:279930/150‑1 (MQ=255) ggggCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAGTGAAGGTGCCAGTacgacg < 2:265048/150‑1 (MQ=255) gCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCATTggcggcgt > 1:411690/1‑50 (MQ=255) gCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCATTggcggcgt < 2:411690/52‑3 (MQ=255) cGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAGTGAAGGTGCCAGTACGACGTGTCAGAGAAAAAGTTATTCCCTGATCGGGAATa > 2:267174/1‑150 (MQ=255) tGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAGTGAAGGTGCCAGTACGAAAAAAAAAAAAAAAAGTTATTCCCTGATCGGGAATAGAATTTg < 2:233744/150‑1 (MQ=255) | CCTGGGTAATGCCCGGCCTGGGCTTCGAAGGTGTCGATGATGCGCTGTGGCGTCAGTCGGGGGGCGCCGAGCCAGCCAGCGGCATAGGCAAAGCCGGCACCTGCGGCCAGCAGCACGCCGCCAATGGCGGCCAGGCGCAAGGCTTTGGCCGGGCCGTGCAAGGGTGTGTTCATGGTCATCGTCCGGTTCAGTGAAGGTGCCAGTACGACGTGTCAGAGAAAAAGTTATTCCCTGATCGGGAATAGAATTTG > NC_002947/3285729‑3285979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |