| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,066,612 | C→A | 18.1% | L832L (CTG→CTT) | mdtC ← | multidrug transporter membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,066,612 | 0 | C | A | 18.1% | 49.4 / 2.9 | 22 | L832L (CTG→CTT) | mdtC | multidrug transporter membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (9/9); new base A (2/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 | |||||||||||
AATGTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTC > NC_002947/4066471‑4066741 | aaTGTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGc < 1:229952/150‑1 (MQ=255) tGTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAACCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCa > 1:123252/1‑150 (MQ=255) gTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCAAGTTTGGCCAc > 1:226269/1‑150 (MQ=255) gTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCAAGTTTGGCCAc > 1:226306/1‑150 (MQ=255) tACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTcc > 2:365151/1‑150 (MQ=255) aCCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGcc < 2:30374/150‑1 (MQ=255) gTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCAAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTc < 2:226306/150‑1 (MQ=255) gTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCAAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTc < 2:226269/150‑1 (MQ=255) agcagcagTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTg > 2:331228/1‑150 (MQ=255) aGGGCTGGCCCTGCTGGGCCGCTTCAACGGCATCGGCAGTGCCGCCGAGCTTGGCACTCACCTCCTCAGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTTCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGa < 1:136188/150‑1 (MQ=255) gggCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGAt < 1:331228/150‑1 (MQ=255) gCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTc < 2:123252/150‑1 (MQ=255) gggCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGc < 1:347068/150‑1 (MQ=255) gCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACt > 2:232637/1‑139 (MQ=255) gCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACt < 1:232637/139‑1 (MQ=255) gCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCa > 1:290791/1‑150 (MQ=255) aaTCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCCCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGtt > 2:92956/1‑150 (MQ=255) aTCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGGACTAGCGTTTTTTGGGGACCCGCTCTTTGGCCAGCCTGTtc > 2:338928/1‑150 (MQ=255) ctcGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGa > 2:273077/1‑86 (MQ=255) ctcGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGa < 1:273077/86‑1 (MQ=255) ctcGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGt > 1:291604/1‑113 (MQ=255) ctcGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGt < 2:291604/113‑1 (MQ=255) | AATGTAGCTTTCATACAGAATGCCCAGCACCAGGTACACCAGCAGCAGTGCGCCAAGAATCATGAAGGGCTGGCCCTGCTGGGTCTGGGCAAAGGCATCGGCAGTGCCGCCGAGCTTGGCAATCACCTCCTCGGGCAGGCCCAGTTTGGCCACCGCGCGCTCCAGTGCCGCCATGGCCTGGTCGGGGCTGTAGCCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTC > NC_002947/4066471‑4066741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |