| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 231,271 | C→A | 18.2% | T311N (ACC→AAC) | PP_0179 → | putative efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 231,271 | 0 | C | A | 18.2% | 45.2 / 4.3 | 22 | T311N (ACC→AAC) | PP_0179 | putative efflux transporter |
| Reads supporting (aligned to +/- strand): ref base C (9/9); new base A (2/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.74e-01 | |||||||||||
GCCGATTGTGCCGAGTTGCCGCACCTGAACCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATCCCCACCAACGGCACCCGTGCCCGCATT > NC_002947/231135‑231419 | gccgATTGTGCCGAGTTGCCGCACCTGAACCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTAc > 1:44385/1‑150 (MQ=255) cGAGTTGCCGCACCTGAACCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAg > 2:357752/1‑150 (MQ=255) tGCCGCACCTGAACCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTg < 1:336677/150‑1 (MQ=255) aaCCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGtt > 1:152660/1‑150 (MQ=255) gCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCAc > 1:375725/1‑150 (MQ=255) ggCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTg > 1:280221/1‑150 (MQ=255) ggCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTg < 2:346688/150‑1 (MQ=255) cTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTAACGGCGCGtt > 1:275947/1‑86 (MQ=255) cTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTAACGGCGCGtt > 1:276004/1‑86 (MQ=255) cTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTAACGGCGCGtt < 2:276004/86‑1 (MQ=255) cTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTAACGGCGCGtt < 2:275947/86‑1 (MQ=255) ccgccCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCaa < 1:47772/150‑1 (MQ=255) gACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCTACCAACCGCTgg < 2:152660/150‑1 (MQ=255) cgcCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTCGGCGACCCTTCGGCCTACCGCTGTGTCttt > 2:96351/1‑150 (MQ=255) gCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCaa < 2:197217/131‑1 (MQ=255) gCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCaa > 1:197217/1‑131 (MQ=255) gccgccACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATc < 2:44385/150‑1 (MQ=255) cGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATCCCCACCAACGGCACCCGTGc < 1:357752/150‑1 (MQ=255) tGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATCCCCACCAACGGCACCCGTGccc > 1:378260/1‑150 (MQ=255) tACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGc > 2:144834/1‑115 (MQ=255) tACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGc < 1:144834/115‑1 (MQ=255) aCCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATCCCCACCAACGGCACCCGTGCCCGCAtt < 2:378260/150‑1 (MQ=255) | GCCGATTGTGCCGAGTTGCCGCACCTGAACCAGCTGGTTCCTGTGGGCGATGGCGCGGCCCTGCTCAAGCGCCGCCCCGACGTGCGCCAGGCCGAACGCCAGCTGGCTGCCGCCACCGCCTATATTGGCGTGGCTACCGGCGCGTTGTACCCGGATATCAGCATTGGCGCCCAGGTTGGCACCATCGGCATCCTGGAGAACCTTGGCGAGCCTTCGACCAACCGCTGGGGCTTTGGCCCGCAGATCAGCTGGAGCATCCCCACCAACGGCACCCGTGCCCGCATT > NC_002947/231135‑231419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |