| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 768,071 | C→T | 44.4% | A49V (GCC→GTC) | mmuP → | S‑methyl‑L‑methionine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 768,071 | 0 | C | T | 44.4% | ‑3.0 / 6.1 | 9 | A49V (GCC→GTC) | mmuP | S‑methyl‑L‑methionine transporter |
| Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (2/2); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAATGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCACGCG > NC_002947/767952‑768197 | aaaTGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACAt > 2:265499/1‑150 (MQ=255)aaaTGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACAt > 2:265606/1‑150 (MQ=255) aaGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAc < 1:265499/150‑1 (MQ=255) aaGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAc < 1:265606/150‑1 (MQ=255) tatatGCAAACCCGCCACATCGTCATGCTTGCGCTGGGCGGAGTGATAGGCACCGGCCTATTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTGACATACTCGGCGCCATCATGGTGTACCTGGTc < 1:176750/149‑1 (MQ=255) tGCAAACCCGCCACATCGTCGTGCCAGCGCTTGGCAGATTGATATTCACCGGGCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCatga < 2:382904/150‑1 (MQ=255) tGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAACTGGTCATGATGTGCCTGGGCGAGCTGGCGGTac > 1:45791/1‑150 (MQ=255) gCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTcagca > 2:72978/1‑150 (MQ=255) gTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCAcgcg > 1:292138/1‑150 (MQ=255) | AAATGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCACGCG > NC_002947/767952‑768197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |