| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 981,736 | G→A | 16.6% | A204T (GCC→ACC) | hscA → | DnaK‑like molecular chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 981,736 | 0 | G | A | 16.6% | 47.3 / 3.0 | 24 | A204T (GCC→ACC) | hscA | DnaK‑like molecular chaperone |
| Reads supporting (aligned to +/- strand): ref base G (13/7); new base A (2/2); total (15/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 | |||||||||||
TATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTGACGACTTCGACCATGCTATTGCCGGCTGG > NC_002947/981601‑981870 | tATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTg > 2:170871/1‑150 (MQ=255)tATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGAAGTTACAAGCTGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTg > 2:124813/1‑150 (MQ=255) gATGACGCCCAACGTCAGGCTACCAAAGACGCATCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGggcggc > 1:156752/1‑150 (MQ=255) tGACGCCCAACGTCAGGCTACCAAATACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGcggcgg > 1:219701/1‑150 (MQ=255) gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGCTCTGGGCGGCGGTACt > 2:158196/1‑150 (MQ=255) gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACt > 1:177118/1‑150 (MQ=255) gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACt > 1:207794/1‑150 (MQ=255) gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACt > 1:376417/1‑150 (MQ=255) aCGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTAAATTCCGGTGATCTGGGCGGCGGTACTTTCGa < 1:124813/150‑1 (MQ=255) aGGCTACCAAATACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATAttt < 2:219701/150‑1 (MQ=255) aaaGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGACCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTg > 1:158781/1‑150 (MQ=255) aaGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTgc < 2:20480/150‑1 (MQ=255) aaGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGACCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTgc > 2:140758/1‑150 (MQ=255) cTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGaa < 2:190866/150‑1 (MQ=255) tgctgcGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGGGGTACTTTGGATATTTCCATCCTGCGCCTAACCGCTGGCGTATTCGAAGGGTTgg > 1:359143/1‑150 (MQ=255) tgcGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTcc > 1:326891/1‑110 (MQ=255) tgcGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTcc < 2:326891/110‑1 (MQ=255) aaCGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGAt > 2:257348/1‑150 (MQ=255) cGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTCCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGggtg < 1:170871/150‑1 (MQ=255) cgccgTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGTGGCGGTACTTTCGATATTTCCATCCTGCGCCTGTCCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTga < 2:156752/150‑1 (MQ=255) gccgTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTgac > 2:135342/1‑150 (MQ=255) gccgTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGACCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTgac < 2:158781/150‑1 (MQ=255) cGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTGACGACTTCGACCATGCTATTGCCGGCTg < 1:135342/150‑1 (MQ=255) gCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTGACGACTTCGACCATGCTATTGCCGGCTgg > 2:293358/1‑150 (MQ=255) | TATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCGTATTCGAAGTGCTGGCCACCGGCGGTGATACCGCCTTGGGTGGTGACGACTTCGACCATGCTATTGCCGGCTGG > NC_002947/981601‑981870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |