| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,359,212 | A→G | 31.0% | intergenic (‑74/+8) | PP_1183 ← / ← PP_1184 | siderophore biosynthesis protein/dienelactone hydrolase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,359,212 | 0 | A | G | 31.0% | 6.3 / 5.7 | 13 | intergenic (‑74/+8) | PP_1183/PP_1184 | siderophore biosynthesis protein/dienelactone hydrolase family protein |
| Reads supporting (aligned to +/- strand): ref base A (3/6); new base G (2/2); total (5/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.35e-01 | |||||||||||
CCGGGCAATGGACGGGGCAGGGGCCAGTGGTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCTCAGCCGATCGGCATCGGGGTTGGTGAACCCGTGCTTGGCC > NC_002947/1359071‑1359361 | ccGGGCAATGGACGGGGCAGGGGCCAGTGGTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCttt < 2:173510/150‑1 (MQ=255) cGGGCAATGGACGGGGCAGGGGCCAGTGGTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCtttt < 1:234015/150‑1 (MQ=255) gggCAATGGACGGGGCAGGGGCCAGTGGTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTAGTCAAGCCTACTTTACCATAACGATTGCACAATCTTTTa > 2:96410/1‑150 (MQ=255) ggCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCa < 1:96410/150‑1 (MQ=255) gcggcTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAg < 2:36678/150‑1 (MQ=255) tgCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCg > 2:1337/1‑150 (MQ=255) cAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCGCAATCTTTTATTTGAACACCTTCTTg < 1:390250/78‑1 (MQ=255) cAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCGCAATCTTTTATTTGAACACCTTCTTg < 1:390343/78‑1 (MQ=255) cAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCGCAATCTTTTATTTGAACACCTTCTTg > 2:390250/1‑78 (MQ=255) cAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCGCAATCTTTTATTTGAACACCTTCTTg > 2:390343/1‑78 (MQ=255) ggAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCt > 2:292751/1‑150 (MQ=255) ccACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCTCAGCCGATCGGCATCGGGGTTGGTGaa < 1:292751/150‑1 (MQ=255) tGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGACTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCTCAGCCGATCGGCATCGGGGTTGGTGAACCCGTGCTTg < 1:315795/150‑1 (MQ=255) acaATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCTCAGCCGATCGGCATCGGGGTTGGTGAACCCGTGCTTGGcc > 2:219662/1‑150 (MQ=255) | CCGGGCAATGGACGGGGCAGGGGCCAGTGGTGCCGGAGCGGGGCGCAGCAGGCGGGAAGTGTGTTCATGGCGGCTATTGTGCCAGCTGTGCAGGCGCTAAGGGAGGTGGCGTGGTAACGCCTCCTTTCCCACAACGATTGCACAATCTTTTATTTGAACACCTTCTTGAAGAACGCCTGCATATCTGCCCAGGAACGCTCGTCCGCTGCCTTGTTATAGCCAATGTCCGGCCCCCCATGTTCACCGTGGCTCAGCCGATCGGCATCGGGGTTGGTGAACCCGTGCTTGGCC > NC_002947/1359071‑1359361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |