| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,781,014 | G→T | 16.0% | P124P (CCC→CCA) | dapC ← | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,781,014 | 0 | G | T | 16.0% | 60.9 / 4.7 | 25 | P124P (CCC→CCA) | dapC | N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base G (11/10); new base T (2/2); total (13/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
AACAGGATCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGCCAAAGCGTCGTTCGCACCACTG > NC_002947/1780871‑1781160 | aacaggaTCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTg > 1:364384/1‑150 (MQ=255) acaggaTCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGa < 2:7910/150‑1 (MQ=255) gaTCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCAc < 2:383947/150‑1 (MQ=255) gaTCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCAc < 2:364384/150‑1 (MQ=255) cacaCCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGgcg < 2:414563/150‑1 (MQ=255) gTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGc > 1:276105/1‑150 (MQ=255) gcaggTAGTGCGGGGTGGCACCGGCCAGCAGCCCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGgga < 2:326960/150‑1 (MQ=255) gTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTTGGGCTGATCACCAGGCCGTCATCGgcgc > 1:367127/1‑89 (MQ=255) gTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTTGGGCTGATCACCAGGCCGTCATCGgcgc > 1:367132/1‑89 (MQ=255) gTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTTGGGCTGATCACCAGGCCGTCATCGgcgc < 2:367132/89‑1 (MQ=255) gTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTTGGGCTGATCACCAGGCCGTCATCGgcgc < 2:367127/89‑1 (MQ=255) gTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGAt < 2:356033/150‑1 (MQ=255) gTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGAtgtg < 2:276105/150‑1 (MQ=255) tGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTgg > 1:192082/1‑150 (MQ=255) cACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGt > 2:353647/1‑150 (MQ=255) ccGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTcc < 2:192082/150‑1 (MQ=255) cGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTCAGTGCGTGCAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTcca < 2:220605/150‑1 (MQ=255) cTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGc > 2:140936/1‑150 (MQ=255) tCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGCCa > 1:150146/1‑150 (MQ=255) gTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAg < 2:201536/73‑1 (MQ=255) gTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAg > 1:201536/1‑73 (MQ=255) aCGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGCCAAAGCGTCGTTCGcacc > 2:55797/1‑150 (MQ=255) aCGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGACGGCGGGCACGCCACAGCGTCGTTCGcacc > 2:56297/1‑150 (MQ=255) gggTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTTACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGGCCAGCCAGCCGGCGGGCACGCCAAAGCGTCGTTCGcaccac > 2:252455/1‑150 (MQ=255) gTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGCCAAAGCGTCGTTCGCACCACTg > 2:219027/1‑150 (MQ=255) | AACAGGATCTGGCAACGCTTCCACACCTCGGCCGGTACGGCGTCGAAGTCCGGGTTGAAACCGTTGTTTTCCAGGCAGGGCAGGTAGTGCGGGGTGGCACCGGCCAGCAGCGCTGCGCCTTCGTAGATCTGGTAGAACGGGTTGGGGCTGATCACCAGGCCGTCATCGGCGCGGTTGACCACGGCCTGGGTGAAGGCGAACAGCGCTTCACGGGTGCCGTTGACCGGGAGGATGTGGCGGTCAGCGTCCAGCCAGCCGGCGGGCACGCCAAAGCGTCGTTCGCACCACTG > NC_002947/1780871‑1781160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |