BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,741,305	0	A	.	61.2%	81.8 / 185.5	105	intergenic (+496/+256)	gltA/yeiW	citrate synthase/putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (1/1); major base . (35/28); minor base C (20/20); total (56/49)
Fisher's exact test for biased strand distribution p-value = 6.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 105 total aligned reads displayed.

CCATCCGCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑AA‑CC‑TCC‑GCCAAC‑TGCATT‑CGTGAA‑CCAAGCAACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCTT  >  NC_002947/4741164‑4741440

ccATCCGCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GCTTCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGcc                                                                                                                                  >  2:1041719/1‑150 (MQ=255)

  aTCCGCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGcccc                                                                                                                                <  2:760678/150‑1 (MQ=255)

      gCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGac                                                                                                                            >  1:2842730/1‑150 (MQ=255)

      gCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGac                                                                                                                            >  2:1121333/1‑150 (MQ=255)

       cctcctTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGaca                                                                                                                           >  1:2905531/1‑150 (MQ=255)

        ctcctTGATGGTCGTAATGTTCAGAACGGAATCACTCGTCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTTGTCACCTTCTTGCTTTATCAG‑CT‑TCT‑GCCACT‑TGCATT‑CTTGAA‑TCCAGGCACAGGCCCCGGacac                                                                                                                          <  2:296401/150‑1 (MQ=255)

          cctTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGt                                                                                                                        <  1:3347423/150‑1 (MQ=255)

            ttGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CAGCT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGtcc                                                                                                                      >  1:2781685/1‑150 (MQ=255)

              gATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGtcctc                                                                                                                    >  1:3704054/1‑150 (MQ=255)

              gATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGtcctc                                                                                                                    <  2:2050525/150‑1 (MQ=255)

               aTGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATATGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGtcctcc                                                                                                                   <  1:2777483/150‑1 (MQ=255)

               aTGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGtcctcc                                                                                                                   <  1:1494610/150‑1 (MQ=255)

                  gTCGTAATGTGCAGCACGGAATCACG‑GAAGTGCACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGc                                                                                                                >  1:1979253/1‑150 (MQ=255)

                   tCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CAGCT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCa                                                                                                               >  1:1357761/1‑150 (MQ=255)

                     gTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAgc                                                                                                             <  1:1766183/150‑1 (MQ=255)

                      tAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGacac                                                                                                                          >  2:2259511/1‑136 (MQ=255)

                      tAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGacac                                                                                                                          <  1:2259511/136‑1 (MQ=255)

                         tgtgCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCt                                                                                                         >  1:3307229/1‑150 (MQ=255)

                            gcagcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGtcctc                                                                                                                    >  2:1130069/1‑136 (MQ=255)

                            gcagcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGtcctc                                                                                                                    <  1:1130069/136‑1 (MQ=255)

                            gcagcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGa                                                                                                      >  1:3554435/1‑150 (MQ=255)

                            gcagcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGa                                                                                                      <  2:2260105/150‑1 (MQ=255)

                              agcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGAcc                                                                                                    <  1:2347133/150‑1 (MQ=255)

                              agcaCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGAcc                                                                                                    <  2:373613/150‑1 (MQ=255)

                              agcaCGGAATCACGCGGCGT‑CACCGGACTGGTGGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGAcc                                                                                                    >  1:2926224/1‑150 (MQ=255)

                                 aCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 <  1:3153694/150‑1 (MQ=255)

                                 aCGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CAGCT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 <  1:1041719/150‑1 (MQ=255)

                                   ggAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTCTACGTTGCTGGCTTGGCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGc                                                                                               <  2:1979253/150‑1 (MQ=255)

                                   ggAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTCTAACTCCAACCCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGc                                                                                               <  2:2926224/150‑1 (MQ=255)

                                   ggAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGc                                                                                               >  1:2975940/1‑150 (MQ=255)

                                   ggAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGAACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGc                                                                                               <  1:2280472/150‑1 (MQ=255)

                                         aCGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGa                                                                                                                             <  1:1410021/114‑1 (MQ=255)

                                         aCGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGa                                                                                                                             >  2:1410021/1‑114 (MQ=255)

                                         aCGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAgcgg                                                                                         >  1:258627/1‑150 (MQ=255)

                                           gcggcgT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAgcggcg                                                                                       >  1:2286093/1‑150 (MQ=255)

                                             ggcgT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGcc                                                                                     <  1:1708022/150‑1 (MQ=255)

                                              gcgT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCt                                                                                    <  2:2975940/150‑1 (MQ=255)

                                               cgT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCtt                                                                                   <  1:2637550/150‑1 (MQ=255)

                                                    aCCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATc                                                                               <  1:535397/150‑1 (MQ=255)

                                                      cGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCAc                                                                             <  1:2303464/150‑1 (MQ=255)

                                                        gCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACgg                                                                           >  2:3118930/1‑150 (MQ=255)

                                                        gCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACg                                                                            <  1:1004242/149‑1 (MQ=255)

                                                        gCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑TA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGAGCCTCGTCCTGGGCCAGCGGCGCCGTGATCACgg                                                                           <  2:1357761/150‑1 (MQ=255)

                                                        gCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACg                                                                            >  2:1004242/1‑149 (MQ=255)

                                                            tGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTcac                                                                       >  1:3249657/1‑150 (MQ=255)

                                                              gCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCacac                                                                     >  2:3286493/1‑150 (MQ=255)

                                                                gTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACcg                                                                   >  2:2688411/1‑150 (MQ=255)

                                                                 tATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGt                                                                          >  2:1807100/1‑142 (MQ=255)

                                                                 tATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGt                                                                          <  1:1807100/142‑1 (MQ=255)

                                                                      aaCTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGATCTTGGGCAGCTGCGCCTTGATCACGGTCACACCGCGATAg                                                             <  2:2310369/150‑1 (MQ=255)

                                                                      aaCTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTca                                                                        <  2:1627587/139‑1 (MQ=255)

                                                                      aaCTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTca                                                                        >  1:1627587/1‑139 (MQ=255)

                                                                      aaCTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAg                                                             >  1:499343/1‑150 (MQ=255)

                                                                        cTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 >  2:1504109/1‑112 (MQ=255)

                                                                        cTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 <  1:1504109/112‑1 (MQ=255)

                                                                         tGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGAcc                                                                                                    >  1:540741/1‑108 (MQ=255)

                                                                         tGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGAcc                                                                                                    <  2:540741/108‑1 (MQ=255)

                                                                          gggTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCt                                                         <  1:50463/150‑1 (MQ=255)

                                                                           ggTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCtt                                                        >  2:1387762/1‑150 (MQ=255)

                                                                                 ggTCCAGCTCTTGTCACCTTCATGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGAATTACCTGCT‑CCGCGC‑ACAGACCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACtt                                                  <  1:3270019/150‑1 (MQ=255)

                                                                                 ggTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGAAT‑TGACTT‑CGTGAA‑GCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACtt                                                  >  1:1591376/1‑150 (MQ=255)

                                                                                 ggTCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACtt                                                  <  1:1512036/150‑1 (MQ=255)

                                                                                  gTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTg                                                 >  1:477335/1‑150 (MQ=255)

                                                                                  gTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTg                                                 >  2:182447/1‑150 (MQ=255)

                                                                                  gTCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTg                                                 >  2:1433418/1‑150 (MQ=255)

                                                                                   tCCAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAgg                                                            <  2:1429130/138‑1 (MQ=255)

                                                                                   tCCAGCTCTGGTCACCTTCGTGCTTGAG‑CAGCT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAgg                                                            >  1:1429130/1‑138 (MQ=255)

                                                                                   tCCAGCTCTGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTgg                                                >  1:3722931/1‑150 (MQ=255)

                                                                                   tCCAGCTCTGGTCACCTTCGTGCCTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTgg                                                >  1:1079240/1‑150 (MQ=255)

                                                                                    ccAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGa                                               >  1:3045529/1‑150 (MQ=255)

                                                                                     cAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGcc                                                          >  1:335091/1‑138 (MQ=255)

                                                                                     cAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGcc                                                          <  2:335091/138‑1 (MQ=255)

                                                                                     cAGCTCTGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGAc                                              <  2:3249657/150‑1 (MQ=255)

                                                                                         tctGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACTTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCgg                                          >  2:1841452/1‑150 (MQ=255)

                                                                                          ctGGTCACCTTCGTGCTTGAG‑CAGCT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGc                                         <  2:3554435/150‑1 (MQ=255)

                                                                                           tGGTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGcc                                        <  1:182447/150‑1 (MQ=255)

                                                                                           tGGTCACCTTCGTGCTTGAG‑CA‑GCTTCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGcc                                        >  2:663898/1‑150 (MQ=255)

                                                                                           tGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTCTGCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGcc                                        >  2:1213731/1‑150 (MQ=255)

                                                                                           tGGTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGcc                                        >  1:27339/1‑150 (MQ=255)

                                                                                            ggTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCa                                       >  1:18520/1‑150 (MQ=255)

                                                                                             gTCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 >  2:2237207/1‑91 (MQ=255)

                                                                                             gTCACCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTg                                                                                                 <  1:2237207/91‑1 (MQ=255)

                                                                                              tCACCTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCAcc                                     >  2:292536/1‑150 (MQ=255)

                                                                                                aCCTTCGTGCTTGAG‑CA‑GC‑TTC‑TGCGACTTGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTc                                   >  2:2216324/1‑150 (MQ=255)

                                                                                                  cTTCGTGCTTGAGCAG‑CT‑TCT‑GCGACT‑TGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCAc                                 <  2:2873597/150‑1 (MQ=255)

                                                                                                                          tgcgacttGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCcg             >  1:1675973/8‑150 (MQ=255)

                                                                                                                           gcgacttGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACt                                <  2:2147841/124‑1 (MQ=255)

                                                                                                                           gcgacttGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACt                                >  1:2147841/7‑130 (MQ=255)

                                                                                                                            cgacttGCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCcgtc           >  2:3700214/6‑150 (MQ=255)

                                                                                                                              acttGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCcgtcct         >  1:1350905/4‑150 (MQ=255)

                                                                                                                               cttGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCcgtcctc        <  1:2688411/148‑1 (MQ=255)

                                                                                                                                ttGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGc                                                           >  2:3591179/2‑98 (MQ=255)

                                                                                                                                ttGCATT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGc                                                           <  1:3591179/97‑1 (MQ=255)

                                                                                                                                  gCATT‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAg                             <  2:191268/126‑1 (MQ=255)

                                                                                                                                    aTT‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCcgtcctcgtcct   >  1:2029285/1‑150 (MQ=255)

                                                                                                                                     tt‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCtt  >  1:1100452/1‑150 (MQ=255)

                                                                                                                                     tt‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCtt  <  1:3160663/150‑1 (MQ=255)

                                                                                                                                     tt‑CGTGAATCCAGGC‑ACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCtt  <  2:3307229/150‑1 (MQ=255)

                                                                                                                                     tt‑CGTGAA‑TCCAGGCACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCtt  <  2:1675973/150‑1 (MQ=255)

                                                                                                                                      t‑CGTGAA‑TCCAGGCACAGGCCCCCGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGacac                       <  2:3441881/128‑1 (MQ=255)

CCATCCGCCTCCTTGATGGTCGTAATGTGCAGCACGGAATCACGCGGCGT‑CACCGGCCATGGCGTATTGAACTGGGTATAGGTCCAGCTCTGGTCACCTTCGTGCTTGAG‑AA‑CC‑TCC‑GCCAAC‑TGCATT‑CGTGAA‑CCAAGCAACAGGCCCCGGACACGTCCTCCTGCAGCGCCTCGACCTTGGCCAGCGGCGCCTTGATCACGGTCACACCGCGATAGGCCTTGTACTTGGACCCGGCCACCTCACTGAGGGACACCTTGATCCCGTCCTCGTCCTT  >  NC_002947/4741164‑4741440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`