New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477178	25 (0.560)	6 (0.190)	6/196	3.4	28.8%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477195	12 (0.380)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.

CCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476994‑5477178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGC  <  NC_002947/5477195‑5477051                                                                                                                                                                                                                                                                                                                                             CCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCT                                                                                                                                                                                       <  1:60152/150‑1         TGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGC                                                                                                                                                                               <  2:86132/150‑1               AACGCCAGCAGACACTGCCAGCCCTGCCGCTGCGGGCGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTC                                                                                                                                                                         >  2:77707/1‑150                ACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCG                                                                                                                                                                        >  1:352091/1‑150                   CCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     <  1:936691/150‑1                        AGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAA                                                                                                                                                                <  1:528980/150‑1                         GACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAAC                                                                                                                                                               >  1:489967/1‑150                          cgtCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACC                                                                                                                                                              >  2:264514/4‑150                           ctCTGCCAGTCCTGCCGCGGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCC                                                                                                                                                             <  2:489967/148‑1                            CCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAAC                                                                                                                                                               >  2:488133/1‑147                            CCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAAC                                                                                                                                                               <  1:488133/147‑1                               GCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTC                                                                                                                                                         <  1:151668/150‑1                               GCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTC                                                                                                                                                         <  2:352091/150‑1                                  AGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      <  2:801189/150‑1                                   GCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     <  1:647286/150‑1                                      CTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     >  1:347892/1‑147                                      CTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     <  2:347892/147‑1                                                                GTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     <  1:376132/105‑1                                                                GTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     >  2:376132/1‑105                                                                         ATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGC                                                                                                                                                                               >  1:492455/1‑86                                                                         ATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGC                                                                                                                                                                               <  2:492455/86‑1                                                                             GTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAA                                                                                                           <  1:264514/150‑1                                                                               GGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATA                                                                                                         <  1:77707/150‑1                                                                                    TGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        <  1:779036/130‑1                                                                                    TGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        >  2:779036/1‑130                                                                                               TTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGC                                                                                                                          >  1:726606/1‑117                                                                                               TTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGC                                                                                                                          <  2:726606/117‑1                                                                                                                                                              CCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATA                                                                                 >  1:45958/1‑94                                                                                                                                                              CCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATA                                                                                 <  2:45958/94‑1                                                                                                                                                               CTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGG                                           <  2:914965/131‑1                                                                                                                                                               CTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGG                                           >  1:914965/1‑131                                                                                                                                                                    CGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGAAGCGCCACGC                   >  1:312580/1‑150                                                                                                                                                                     GCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCA                  >  2:479962/1‑150                                                                                                                                                                     GCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAA                                       >  1:846726/1‑129                                                                                                                                                                     GCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAA                                       <  2:846726/129‑1                                                                                                                                                                     GCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAACAGGCCGGCACAGGCAAACCTGCA‑ATTGATTCCGGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCA                  >  1:240655/1‑150                                                                                                                                                                             ACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCA          >  1:243418/1‑150                                                                                                                                                                               CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGGCCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAG                              <  2:169966/128‑1                                                                                                                                                                               CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGGCCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAG                              >  1:169966/1‑128                                                                                                                                                                                 GCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACAC      >  2:598672/1‑150                                                                                                                                                                                     CTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGC  >  2:250469/1‑150                                                                                                                                                                                     CTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGC  >  1:940510/1‑150                                                                                                                                                                                                                                                                                                                                             CCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476994‑5477178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGC‑AACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGC  <  NC_002947/5477195‑5477051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.