New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4861197	21 (0.470)	11 (0.300)	9/228	3.0	31.8%	intergenic (‑103/+134)	ligA/PP_4275	DNA ligase/cell division protein ZipA
	?	NC_002947	= 4861238	30 (0.810)					intergenic (‑144/+93)	ligA/PP_4275	DNA ligase/cell division protein ZipA

GTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAG  >  NC_002947/4861090‑4861385                                                                                                                                                     |                                                                                                                                                    gTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAg                                                                                                                                                    >  2:999738‑M2/1‑149 (MQ=255)     tGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagc                                                                                                                                                <  2:597447‑M2/150‑6 (MQ=255)      gggATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcg                                                                                                                                               <  2:879417‑M2/150‑7 (MQ=255)        gATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                                                             >  1:872222‑M2/1‑142 (MQ=255)        gATTTGTCTTCGCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTTTCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcggg                                                                                                                                             >  2:266949‑M2/1‑142 (MQ=255)         aTTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggt                                                                                                                                            >  2:202613‑M2/1‑141 (MQ=255)          tttGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtt                                                                                                                                           >  1:879417‑M2/1‑140 (MQ=255)              tcatctcTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTAcc                                                                                                                                       >  1:1055988/4‑150 (MQ=255)                ttctCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGCGATGTACCGGTAggagcgggtttacccc                                                                                                                                     <  2:928676‑M2/150‑17 (MQ=255)                         aaagcaaaAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggc                                                                                                                            >  2:1055988‑M2/1‑125 (MQ=255)                              aaaaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGca                                                                                                                       >  1:40898/1‑150 (MQ=255)                                        cTTGGGGTGGTGCGTGGGGTTCCAGGCGTCTGTTTACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAacga                                                                                                             <  1:597447/150‑1 (MQ=255)                                                  tgCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACCTCCCCTAGGGCGGTGATGTCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCgc                                                                                                   >  2:446431/1‑149 (MQ=255)                                                        gggTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGc                                                                                             >  1:303272/1‑150 (MQ=255)                                                                        ttGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGgc                                                                             >  1:972371/1‑150 (MQ=255)                                                                           aCTGTGCCAGACTCTTCGCGGGTAAACCCGCTACCACAAGGGCGACACCTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTAACCGCGACGAGGCCAGCACAGACAACCACGGTCCCCGAAACGGCCAGCACGCCCTCAGgctgc                                                                          >  2:483013/1‑150 (MQ=37)                                                                                         ttCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGaa                                                                                                  >  2:90023/1‑112 (MQ=255)                                                                                         ttCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGaa                                                                                                  <  1:90023/112‑1 (MQ=255)                                                                                            gcgGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTc                                                                 <  1:254567/142‑1 (MQ=255)                                                                                            gcgGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTc                                                                 >  2:254567/1‑142 (MQ=255)                                                                                                   aaCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaa                                                  <  2:207829‑M2/150‑100 (MQ=255)                                                                                                    tctcGCTCCCAGAAGGGCGTCAGATGCCGTAGGGCGGTGGTGTACCTGTAGGGGCGGGTTTACCCGCGAGGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCt                                                 <  1:928676/147‑1 (MQ=255)                                                                                                    aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaaga                                                           <  1:1038304‑M2/140‑91 (MQ=255)                                                                                                    aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaaga                                                           >  2:1038304‑M2/1‑50 (MQ=255)                                                                                                    aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggccggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaat                                                 <  2:985183‑M2/150‑101 (MQ=255)                                                                                                     cccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacac                                                                                                         <  1:30028‑M2/93‑45 (MQ=255)                                                                                                     cccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacac                                                                                                         >  2:30028‑M2/1‑49 (MQ=255)                                                                                                      ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaagccggcacaggcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcc                                               <  2:415428‑M2/150‑103 (MQ=255)                                                                                                      ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc                                               >  2:287412/1‑150 (MQ=255)                                                                                                        gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttg                                                                >  1:32769‑M2/1‑46 (MQ=255)                                                                                                        gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttg                                                                <  2:32769‑M2/131‑86 (MQ=255)                                                                                                        gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggccggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaatagaagacaaatccca                                             <  2:352412‑M2/150‑105 (MQ=255)                                                                                                         cTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTgg                                            <  2:972371/150‑1 (MQ=255)                                                                                                           cccACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAggagcgggtttacccgcgaagaggctggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccatga                                          >  1:207829‑M2/1‑43 (MQ=255)                                                                                                             cacaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTAGTCTGGATCTGTCAGCGCTTCTGGGTTa                                        >  2:472249/1‑150 (MQ=255)                                                                                                              acaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCGCGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAg                                       >  1:908303/1‑150 (MQ=255)                                                                                                              acaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAg                                       >  1:340289/1‑150 (MQ=255)                                                                                                              acaAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAg                                       >  1:600359/1‑150 (MQ=255)                                                                                                                 aGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAgcgc                                    >  1:681910/1‑150 (MQ=255)                                                                                                                    gCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACg                                 <  1:225635/150‑1 (MQ=255)                                                                                                                          caTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAgg                                                                              >  2:787221/1‑99 (MQ=255)                                                                                                                          caTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAgg                                                                              <  1:787221/99‑1 (MQ=255)                                                                                                                          caTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTc                           <  2:40898/150‑1 (MQ=255)                                                                                                                          caTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTc                           <  2:600359/150‑1 (MQ=255)                                                                                                                           aTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCg                          >  2:940158/1‑150 (MQ=255)                                                                                                                           aTGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCg                          >  2:112022/1‑150 (MQ=255)                                                                                                                                   gggCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTcgac                  >  2:127615/1‑150 (MQ=255)                                                                                                                                          gATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGc           >  1:446345/1‑150 (MQ=255)                                                                                                                                               aCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCg      >  1:405833/1‑150 (MQ=255)                                                                                                                                               aCCTGTAGAAGCGGGTTTACGCGCGAGGGGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCg      >  2:361524/1‑150 (MQ=255)                                                                                                                                                   gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAg  >  1:943293/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTCATGGGATTTGTCTTCTCTTGCAAAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGATACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAG  >  NC_002947/4861090‑4861385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.