| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 359675 | 92 (1.330) | 20 (0.300) | 16/250 | 4.2 | 19.4% | intergenic (+32/+88) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 359721 | 78 (1.180) | intergenic (+78/+42) | gbdR/PP_0299 | AraC family transcriptional regulator/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/359525‑359675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC < NC_002947/359721‑359593 CGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCG > 2:1711407/1‑150 CATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCA > 2:1601194/1‑150 ATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCT > 2:1596848/1‑150 CATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCGCTGGCTCAAGCTCAGCGG < 2:208270/150‑1 ACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGA < 1:1601194/150‑1 CCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC < 2:707491/150‑1 CCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCGCTGGCTCAAG > 2:1023560/1‑136 CCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCGCTGGCTCAAG > 2:156271/1‑136 CCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCGCTGGCTCAAG < 1:1023560/136‑1 CCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCTCCCACAGGTCACCGCTGGCTCAAG < 1:156271/136‑1 CCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGAC < 1:1631433/150‑1 GCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGC < 1:1596848/150‑1 GGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGA < 1:47382/150‑1 GCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGA > 2:1570363/1‑135 GCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGA < 1:1570363/135‑1 AATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCC > 2:1472653/1‑122 AATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCC < 1:1472653/122‑1 GACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG > 1:234468/1‑107 GACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG < 2:234468/107‑1 ATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCG < 2:1557567/103‑1 ATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCG > 1:1557567/1‑103 CCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC > 1:200701/1‑133 CCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC < 2:200701/133‑1 CGCAGCAGGTGGCCATGATGCCGATTCCGCAGGCCATGACCCTGTCGCCGCACAGCGGGCCGATGGCGGCCCTGAGCCAGGCGCGCAATGAGTCGACATTTGCCAGTGTAAGGCTCTGACACCGCGCCGGCCTCTTCGCGG‑GCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/359525‑359675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGCGCGGTGTCAGAGCCTTACACTGGCAAATGTCGACTCATTGCGCGCCTGGCTCAGGGC < NC_002947/359721‑359593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |