| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1811479 | 24 (1.240) | 3 (0.190) | 3/212 | NT | 12.9% | intergenic (+44/+84) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator |
| ? | NC_002947 | = 1811513 | 21 (1.320) | intergenic (+78/+50) | ispD/PP_1615 | 2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator | |||||
AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811312‑1811479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < NC_002947/1811513‑1811369 AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGC < 1:14099/150‑1 CTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGGCGACAGCGTAAACGCTGAGCGTTCTCCCGGCCTAGCCTTTTCGCGGG > 1:53211/1‑150 CATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACC > 2:148296/1‑150 CATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACC > 2:127237/1‑150 GCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG < 2:306734/124‑1 GCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGG > 1:306734/1‑124 GCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCG < 1:490804/121‑1 GCCGCGGCCGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCG > 2:490804/1‑121 AAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGG < 2:354000/150‑1 CGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG < 2:278860/134‑1 CGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGG > 1:278860/1‑134 TTCGCGGGTAAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGC > 1:485625/1‑150 aacCCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCAATTGTAGGAGCGGGTTTACCCTCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACC < 2:36447/147‑1 AAACCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACa < 1:358954/150‑2 CCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGC < 2:126994/115‑1 CCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGC > 1:126994/1‑115 CCCGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAACCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTT > 2:233665/1‑150 ctCTCCTACGACCGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTAT < 2:125695/148‑1 CGCTCCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGCGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTAT < 1:335954/150‑1 CCTACGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < 2:485625/150‑1 AGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1811312‑1811479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGACGGTCTGTGTCCAACCACCGATGCAATCCATTGTAGGAGCGGGTTTACCCGCGAAAAGGCCAGCCCAGGAGAACGCTCAGCGTTTACCCGCCCAGCGCTGGCGCAACCATTCGAGATCTTCGGGCCGGGTCACCTTTATGTTG < NC_002947/1811513‑1811369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |