New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2794965	15 (0.780)	6 (0.350)	6/232	NT	28.9%	intergenic (+30/+82)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase
	?	NC_002947	= 2795016	16 (0.920)					intergenic (+81/+31)	PP_2447/puuB	hypothetical protein/gamma‑glutamylputrescine oxidase

GTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2794810‑2794965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgccggcaaACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCAACGCTATTCGTTCAGGCTATTGACCGCCTGCTTCGCCGCAATCTCTTGCCCGGCCTTGGCCAA  <  NC_002947/2795016‑2794876                                                                                                                                                                                                                                                                                                           GTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGC                                                                                                                                                     >  2:263092/1‑150         ACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGGCGTCATGTTGGCCGGCAAAC                                                                                                                                             >  2:473706/1‑150                               GTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGCGACTATGCTGAACGAATAGCGTTGCCTGTGCAGGCCTATTCGCCGGCAAACCTGCGCCCACACGGACTGTGCA                                                                                                                       >  1:208894/1‑150                                               GGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAAGCCTGCGCCCACACGGACTGGGTAATAAGCACAAATCCTG                                                                                                       <  2:43813/150‑1                                                            GGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTT                                                                                          <  1:473706/150‑1                                                              ATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGC                                                                                        <  1:260905/150‑1                                                               TGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCCTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCC                                                                                       <  2:208894/150‑1                                                                     GGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAA                                                                                 <  2:346102/150‑1                                                                                                                                                    CGCCGGCAAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCAACGCTATTCGTTCAGGCTATTGACCGCCTGCTTCGCCGCAATCTCTTGCCCGGCCTTGGCCAA  <  2:451161/150‑1                                                                                                                                                           AAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCAACGCTATTCGTTCAGGCTATTGACCGCCTGCTTCGCC                            <  1:477111/117‑1                                                                                                                                                           AAACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCAACGCTATTCGTTCAGGCTATTGACCGCCTGCTTCGCC                            >  2:477111/1‑117                                                                                                                                                                                                                                                                                                           GTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2794810‑2794965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgccggcaaACCTGCGCCCACACGGACTGTGCAATAAGCACAAATCCTGTGGGCGCGGGCTTGCCGGCGAAGAAGCCGGCACAGGCAACGCTATTCGTTCAGGCTATTGACCGCCTGCTTCGCCGCAATCTCTTGCCCGGCCTTGGCCAA  <  NC_002947/2795016‑2794876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.