New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4042090	24 (1.240)	3 (0.160)	3/250	NT	12.4%	coding (134/852 nt)	PP_3563	hypothetical protein
	?	NC_002947	= 4042115	19 (1.010)					coding (159/852 nt)	PP_3563	hypothetical protein

TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4041977‑4042090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA  <  NC_002947/4042115‑4041967                                                                                                                                                                                                                                                                         TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTG                                                                                                                   <  1:88021/150‑1                            TTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCT                                                                                                                    >  1:229502/1‑122                            TTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGGCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCT                                                                                                                    <  2:229502/122‑1                                                                                                                  GCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA  <  1:323580/150‑1                                                                                                                                                                                                                                                                         TGTCGCCTTGTCACTGGGCCTGGTCGTTTCGACCGGGGCGCTGGCAGCCACCGGCGAAGAGGCGCAGTTGATCGATTCGATCAATGTCTACCGCAGCAAGGCCCAGCCCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4041977‑4042090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggCGGCAGTTCCAACGACGCCTCGCCACCGCAGGGCTGGGCCTTGCTGCGGTAGACATTGATCGAATCGATCAACTGCGCCTCTTCGCCGGTGGCTGCCAGCGCCCCGGTCGAAACGACCAGGCCCAGTGACAAGGCGACAACGGATGTCA  <  NC_002947/4042115‑4041967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.