| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,657,310 | +GACGAT | 50.6% | coding (436/1998 nt) | tktA ← | transketolase A |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5657310 | 16 (0.870) | 16 (0.870) +GACGAT |
15/234 | NT | 50.6% | coding (436/1998 nt) | tktA | transketolase A |
| ? | NC_002947 | 5657311 = | 16 (0.830) | coding (435/1998 nt) | tktA | transketolase A | |||||
CTTCGCCGTCGATGGAGATGCCATTGTCATCGTAGAAGGCGATCAGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5657169‑5657310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCGTATTCCGGG > NC_002947/5657311‑5657446 |||||| CTTCGCCGTCGATGGAGATGCCATTGTCATCGTAGAAGGCGATCAGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGA > 2:37631/1‑150CTTCGCCGTCGATGGAGATGCCATTGTCATCGTAGAAGGCGATCAGCTTGTTCAGGCCCAGGGTGCCGACCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGA > 2:319117/1‑150 tTTGTCATCGTAGAAGGCGATCTGCTTGTTCAGGCCCAGGGTGTCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCAGGCAGCCGTCGCCGAGGAACACCTAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTAACGGTT < 2:57984/149‑1 TCGTAGAAGGCGATCAGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGCCGATATTGTGGCCGTCACGGTTGAACTGG > 2:264105/1‑150 ATCAGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACT > 2:3009/1‑150 AGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTG < 1:475056/116‑1 AGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTG > 2:475056/1‑116 AGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGC > 1:383421/1‑125 AGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGC < 2:383421/125‑1 TGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCA < 1:37631/150‑1 CGGTCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGG < 1:3009/150‑1 TTCATGGGAGGTGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTG < 2:395274/150‑1 cGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAG > 2:338886/2‑150 CCGAGGAACACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGG < 1:338886/150‑1 ACATAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCG > 2:430454/1‑150 TAGGTGTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCGTAT > 1:69276/1‑150 GTTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCGTATTCCGG < 1:430454/150‑1 TTGTGGTCGACGATGACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCGTATTCCGGG > 2:409010/1‑150 |||||| CTTCGCCGTCGATGGAGATGCCATTGTCATCGTAGAAGGCGATCAGCTTGTTCAGGCCCAGGGTGCCGGCCAGCGAGGCGACTTCATGGGAGATGCCTTCCATCATGCAGCCGTCGCCGAGGAACACATAGGTGTTGTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5657169‑5657310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACGATATTGTGGCCGTCACGGTTGAACTGGGCAGCCAGTACTTTTTCGGCCAGGGCGAAGCCCACGGCGTTGGCGATACCCTGGCCGAGCGGGCCGGTGGTGGTTTCAACGCCTGGGGTGTAGCCGTATTCCGGG > NC_002947/5657311‑5657446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |