New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000957 =	30 (1.550)	6 (0.310)	6/256	NT	16.5%	intergenic (+8/+101)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001055 =	31 (1.620)					intergenic (+106/+3)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

CGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001106‑6000957 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA  >  NC_002947/6001055‑6001197                                                                                                                                                                                                                                                                                                       CGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG                                                                                                                                                 <  2:201501/150‑1                               CCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG                                                                                                                                                 <  1:37127/120‑1                               CCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG                                                                                                                                                 >  2:37127/1‑120                                CTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTTACAACACAACCCTCAGGCACTGCCCC                                                                                                                  >  1:387563/1‑150                                                             TTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACT                                                                                         >  1:47732/1‑146                                                             TTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACT                                                                                         <  2:47732/146‑1                                                                          CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGC                                                                        >  2:3329/1‑150                                                                                CTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAA                                                                  <  2:387563/150‑1                                                                                                                                                AGGCCGGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA  <  1:3329/150‑1                                                                                                                                                                                                                                                                                                       CGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001106‑6000957 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA  >  NC_002947/6001055‑6001197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.