| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 445088 | 19 (0.980) | 5 (0.330) | 4/204 | NT | 20.4% | intergenic (+58/‑230) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| ? | NC_002947 | = 445127 | 24 (1.570) | intergenic (+97/‑191) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase | |||||
GCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAG > NC_002947/444941‑445233 | gCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATg < 1:443938/150‑1 (MQ=255) cGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGc < 2:337375/150‑1 (MQ=255) tGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTc < 2:301005/150‑1 (MQ=255) gCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGa > 1:235719/1‑150 (MQ=255) gcAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAtgcgcccgaccagacaaaattgttgtctgata < 2:22892‑M1/150‑33 (MQ=255) gcAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatc > 2:439384‑M1/1‑118 (MQ=255) aGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggac > 1:79908‑M1/1‑114 (MQ=255) tCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttc < 1:87432‑M2/150‑4 (MQ=255) aGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcg < 2:79908‑M1/150‑46 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgg < 1:439384‑M1/150‑47 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:237628‑M2/1‑143 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:435211‑M2/1‑143 (MQ=255) gCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcggg > 2:345455‑M2/1‑142 (MQ=255) tCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaa > 2:118607‑M2/1‑139 (MQ=255) cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagc < 1:359314‑M2/150‑14 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcc < 1:269676‑M2/150‑15 (MQ=255) aaaTGCTTGGCCGGATAATAGACAAATACGCCTGAATACTTGCGGCATCCCCTATTTAAGCGCCTGCCTTGTAAGAGCGCGCTTGCCCGCGAACGAGTCAAACCACAGAACATTTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCt < 2:69626/150‑1 (MQ=255) gCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGc < 2:173774/92‑1 (MQ=255) gCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGc > 1:173774/1‑92 (MQ=255) tGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaa > 2:432991‑M2/1‑125 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:9426‑M2/1‑114 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg < 2:9426‑M2/121‑8 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggc < 2:305907/150‑1 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGACTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggc < 2:304254/150‑1 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACATTTTTGTCTGGTCGGGCGCCTTCG‑CGGGCACGCCCGCTCCTAC‑AAGGGTTTGtggcatg < 2:389390/150‑1 (MQ=255) cacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggcatgg < 2:429277/150‑1 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACt < 2:359314/150‑1 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg < 1:280806‑M2/103‑8 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 2:280806‑M2/1‑96 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGc < 1:15828/150‑1 (MQ=255) ccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGa < 2:327703/127‑1 (MQ=255) ccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGa > 1:327703/1‑127 (MQ=255) aGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc < 2:235719/150‑1 (MQ=255) gcgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGGCAACAATTTTTTCTGGTCGGGCATCTTCGAAGAGCA‑‑CACGTCTGTACTAAAGGCTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa > 1:479961/1‑150 (MQ=255) ttGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggcca > 2:432991‑M1/1‑25 (MQ=255) gAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcg < 1:486177‑M1/62‑44 (MQ=255) gAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcg > 2:486177‑M1/1‑19 (MQ=255) gAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt < 2:269676/150‑1 (MQ=255) gCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa > 2:165040/1‑150 (MQ=255) ggCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtc < 1:269676‑M1/150‑137 (MQ=255) gCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcg < 1:359314‑M1/150‑138 (MQ=255) ttGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcgga > 2:118607‑M1/1‑11 (MQ=255) cccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgc > 2:345455‑M1/1‑8 (MQ=255) cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa < 2:175397/141‑1 (MQ=255) cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa > 1:175397/1‑141 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc > 1:435211‑M1/1‑7 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc > 1:237628‑M1/1‑7 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcga > 1:9426‑M1/1‑7 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcga < 2:9426‑M1/121‑115 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagta < 1:280806‑M1/103‑97 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagta > 2:280806‑M1/1‑7 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc < 1:439384‑M2/150‑105 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg < 2:479961/150‑1 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcct < 2:79908‑M2/150‑106 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa < 1:165040/150‑1 (MQ=255) cgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc < 1:486177‑M2/62‑20 (MQ=255) cgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc > 2:486177‑M2/1‑43 (MQ=255) gAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttga < 1:87432‑M1/150‑148 (MQ=255) | GCGGTGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAG > NC_002947/444941‑445233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |