New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5162618 =	27 (1.400)	5 (0.320)	5/206	NT	26.0%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162702 =	7 (0.450)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

GGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACC  >  NC_002947/5162575‑5162841                                                                                                                                |                                                                                                                                            ggCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCtgatga                                                                                                                       >  2:181642/1‑150 (MQ=255)  gCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGaa                                                                                                                      <  1:300544/150‑1 (MQ=255)                                 tGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATc                                                                                       <  1:181642/150‑1 (MQ=255)                                    gcCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGaa                                                                                    >  1:230876/1‑150 (MQ=255)                                    gcCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGaa                                                                                    <  2:230876/150‑1 (MQ=255)                                         ccccTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATAccc                                                                               <  1:464711/150‑1 (MQ=255)                                                      ttgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTa                                                                                             >  1:213316‑M2/75‑123 (MQ=255)                                                      ttgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTa                                                                                             <  2:213316‑M2/49‑1 (MQ=255)                                                          ccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                  <  2:397768‑M2/76‑1 (MQ=255)                                                          ccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                  >  1:397768‑M2/71‑146 (MQ=255)                                                          CCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                  >  1:242041‑M1/1‑146 (MQ=255)                                                          CCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAg                                                                  <  2:242041‑M1/146‑1 (MQ=255)                                                                 cacaggtacagcacagttctcaaggtctgtggtgatactgtgggagcgggcaagccagcgaagGGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCAACAAACGAGCTCAACACGcc                                                       >  1:76369‑M2/64‑150 (MQ=255)                                                                             acaGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCttt                                           >  2:391055/1‑150 (MQ=255)                                                                                                       tgtgggagccggaaagtccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGACTACCCCGCACCAAACGAGATCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGa                 <  2:141025‑M2/125‑1 (MQ=255)                                                                                                        gtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAaca                                                           >  1:332454‑M2/25‑107 (MQ=255)                                                                                                        gtgggagcgggcaagcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAaca                                                           <  2:332454‑M2/83‑1 (MQ=255)                                                                                                          gggagcgggcaagccagcgaagGGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCAACAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAgg              <  2:76369‑M2/128‑1 (MQ=255)                                                                                                                    ttgcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGa    >  1:439064‑M2/13‑150 (MQ=255)                                                                                                                      gcccgcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGAcc  >  1:431014‑M2/11‑150 (MQ=255)                                                                                                                          gcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGa                                                                   <  2:230271‑M2/75‑1 (MQ=255)                                                                                                                          gcgaagAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGa                                                                   >  1:230271‑M2/7‑81 (MQ=255)                                                                                                                                |                                                                                                                                            GGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACGAGCTCAACACGCCCAACGAGCCTTTGGCCAGGTCATCCTGGTACAGGTGGAAGGCAATCACCGACC  >  NC_002947/5162575‑5162841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.