New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5877063	31 (1.600)	4 (0.250)	4/210	NT	12.3%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5877097	32 (2.040)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

TGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTC  >  NC_002947/5876949‑5877241                                                                                                                                                        |                                                                                                                                                 tGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCTCACCGGCCTGGAACCGTGGCGATCCCt                                                                                                                                                 >  1:103906‑M2/1‑149 (MQ=255)            cTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg                                                                                                                                      >  2:170863‑M2/1‑138 (MQ=255)              gTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtt                                                                                                                                    <  1:447904‑M2/150‑15 (MQ=255)                                       ctgctgctgGGCACCGCTGAAGGCGTGAAAAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACACG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGGGATCTCTGTAGGACCGGGTTTACCCGCGAACAAGCCCTGACAgtc                                                                                                           >  1:79341/1‑148 (MQ=255)                                        tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGa                                                                                                                <  2:419546/144‑1 (MQ=255)                                        tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGa                                                                                                                >  1:419546/1‑144 (MQ=255)                                         gctgctgGGAACCTCTTAATGCGTGAAGAGCCTGAAGGCCGAGTAAAACACTTC‑‑‑GATAGACCGGAAATCTGTATAAGGTCCCTCACCGGCCTGGAACCGTGGCGATCCCTCTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGa                                                                                                         <  1:159859/150‑1 (MQ=255)                                           tgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtc                                                                                                       >  1:455713/1‑150 (MQ=255)                                                   aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               <  2:482276/150‑1 (MQ=255)                                                   aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               <  1:189267/150‑1 (MQ=255)                                                       cTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACa                                                                                                                        >  1:383615/1‑121 (MQ=255)                                                       cTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACa                                                                                                                        <  2:383615/121‑1 (MQ=255)                                                            ggCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTg                                                                                      >  2:72861/1‑150 (MQ=255)                                                               gggAAGAGCCTGGAGGCCGAGTAAAACCCGTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAac                                                                                   <  2:297579/148‑1 (MQ=255)                                                                 gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAacac                                                                                 >  2:379983/1‑150 (MQ=255)                                                                    gagCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATa                                                                              <  1:379983/150‑1 (MQ=255)                                                                       ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTGGGCTGCTTGAACACATAGaa                                                                           <  2:447904/150‑1 (MQ=255)                                                                        cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                    >  2:451040/1‑124 (MQ=255)                                                                        cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                    <  1:451040/124‑1 (MQ=255)                                                                                cGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                                                  <  2:249017/150‑1 (MQ=255)                                                                                 gAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                                             >  2:187457/1‑106 (MQ=255)                                                                                 gAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                                             <  1:187457/106‑1 (MQ=255)                                                                                          ccTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagc                                                                    <  2:450863‑M2/138‑79 (MQ=255)                                                                                          ccTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagc                                                                    >  1:450863‑M2/1‑60 (MQ=255)                                                                                                   gTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                                               >  1:243898/1‑150 (MQ=255)                                                                                                       aCCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               <  2:323255/98‑1 (MQ=255)                                                                                                       aCCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               >  1:323255/1‑98 (MQ=255)                                                                                                        cccG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                                                                               >  2:62219/1‑113 (MQ=255)                                                                                                        cccG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                                                                               <  1:62219/113‑1 (MQ=255)                                                                                                           g‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGt                                                    <  1:293918/137‑1 (MQ=255)                                                                                                           g‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGt                                                    >  2:293918/1‑137 (MQ=255)                                                                                                                      aaGGTACCCCACCGGCCTGGAACCGTGGCGATCAATGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatcca                               <  1:3266/150‑1 (MQ=255)                                                                                                                           aCCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggt                                                                                 <  1:444998‑M2/95‑66 (MQ=255)                                                                                                                           aCCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggt                                                                                 >  2:444998‑M2/1‑30 (MQ=255)                                                                                                                             cccACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAAt                        <  1:72861/150‑1 (MQ=255)                                                                                                                                    gCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               <  1:346114/72‑1 (MQ=255)                                                                                                                                    gCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                                               >  2:346114/1‑72 (MQ=255)                                                                                                                                    gCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTcc                 <  2:455713/150‑1 (MQ=255)                                                                                                                                           aCCGTGGCGATGCCTGGAGGAGCGGGGTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGCTTCGGCTCACTGACCAGGTAAATGGTCGCCGCTTCAGCCATCGCAACCCCCTCCGCCTGCg          <  2:79341/150‑1 (MQ=255)                                                                                                                                           aCCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCg          <  1:347526/150‑1 (MQ=255)                                                                                                                                                   gATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTc  >  2:367271/1‑150 (MQ=255)                                                                                                                                                        |                                                                                                                                                 TGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTC  >  NC_002947/5876949‑5877241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.