| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,018,022 | C→A | 24.9% | R634R (CGC→CGA) | bcsB → | cellulose synthase and translocator subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,018,022 | 0 | C | A | 24.9% | 25.8 / 3.1 | 16 | R634R (CGC→CGA) | bcsB | cellulose synthase and translocator subunit |
| Reads supporting (aligned to +/- strand): ref base C (6/6); new base A (2/2); total (8/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
CCTGCGCGACGCGCCCGACCTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATTGCTGCGCGACATGCTTG > NC_002947/3017896‑3018152 | ccTGCGCGACGCGCCCGACCTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGcc > 2:37466/1‑150 (MQ=255) cgcgACGCGCCCGACCTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGAtt < 1:79843/150‑1 (MQ=255) cgACGCGCCCGACCTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGc > 1:319/1‑150 (MQ=255) cTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGGGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCggg > 2:7304/1‑150 (MQ=255) gTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTc < 2:358101/150‑1 (MQ=255) cccAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGAGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACg > 1:217642/1‑150 (MQ=255) ccAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGaa > 1:70012/1‑135 (MQ=255) ccAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGaa < 2:70012/135‑1 (MQ=255) tGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGAGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAgt > 1:360111/1‑150 (MQ=255) cAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGcc < 2:319/150‑1 (MQ=255) cGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTg < 1:7304/150‑1 (MQ=255) cATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGAGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAaca < 2:360111/150‑1 (MQ=255) ttCGATACTGAGCCGGTGGCTGCAAGCAGCCGAGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATtgctg < 2:217642/150‑1 (MQ=255) ccGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATTGCTGCGCGACATGCtt > 1:67199/1‑150 (MQ=255) ggCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATTGCTGCGCGACATGCTTg < 1:368712/146‑1 (MQ=255) ggCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATTGCTGCGCGACATGCTTg > 2:368712/1‑146 (MQ=255) | CCTGCGCGACGCGCCCGACCTTGGCCTGTTGCTCAGCGCCCAGCGTGACTGGTTGCTGCAGGGCCGCAGCGCATCGTTGCCCGGTGGCCAGCGTTTCGATACTGAGCCGGTGGCTGCAAGCAGCCGCGTGGCGGTCAGCGCCCAGGCGCCGATTGCGGCCATCACCGGGCTGAAGTCGCCGTTCCACGAGCAGCGCAGTGTTGTGGCCTTGCTGGCCAACAGCGACAGCGATTACGCATTGCTGCGCGACATGCTTG > NC_002947/3017896‑3018152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |