| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,628,125 | C→G | 23.9% | intergenic (+11/‑129) | PP_3198 → / → PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,628,125 | 0 | C | G | 23.9% | 32.2 / 9.7 | 21 | intergenic (+11/‑129) | PP_3198/PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
| Reads supporting (aligned to +/- strand): ref base C (7/9); new base G (3/2); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.65e-01 | |||||||||||
CGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGA > NC_002947/3627985‑3628266 | cGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAg < 2:188351/150‑1 (MQ=255)cGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGCCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAg < 1:140694/150‑1 (MQ=255) ccGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgacgc > 2:185458/1‑150 (MQ=255) gCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCa < 1:185458/150‑1 (MQ=255) ccccTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCg < 1:120456/150‑1 (MQ=255) tGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTg < 1:274151/126‑1 (MQ=255) tGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTg > 2:274151/1‑126 (MQ=255) cGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCa > 1:186553/1‑150 (MQ=255) aGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAg < 2:186553/150‑1 (MQ=255) cGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGgcc < 1:246996/150‑1 (MQ=255) tCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATa > 2:412686/1‑74 (MQ=255) tCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATa < 1:412686/74‑1 (MQ=255) gcgggcggCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACg > 2:256884/1‑150 (MQ=255) ggcggcTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACgggg < 1:43156/150‑1 (MQ=255) gctATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAg > 2:156873/1‑150 (MQ=255) cTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAg > 2:190357/1‑98 (MQ=255) cTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAg < 1:190357/98‑1 (MQ=255) ttGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCNCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAGCAAAACGTg > 1:274663/1‑150 (MQ=255) ccaTCGCGCCCCGCAATAGGTCGCATCCCCCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgtg < 2:274663/148‑1 (MQ=255) cTATCGCGCGGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgtg > 1:370690/1‑150 (MQ=255) tATCGCGCGGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGAAAGGTGGGCAGTTGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGa > 2:366137/1‑150 (MQ=255) | CGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGCATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGTGA > NC_002947/3627985‑3628266 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |