New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 457327552 (1.250)7 (0.210) 7/220 3.1 14.0% intergenic (+39/‑98) PP_4054/glgX hypothetical protein/glycogen debranching enzyme
?NC_002947 = 4573292 44 (1.300)intergenic (+56/‑81) PP_4054/glgX hypothetical protein/glycogen debranching enzyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4573107‑4573275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgctcctacaTGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAG  <  NC_002947/4573292‑4573148
                                                                                                                                                                                                                                                                                                                          
GGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGC                                                                                                                                                                      <  2:811611/150‑1
   AGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGG                                                                                                                                                                   >  1:536378/1‑150
              AGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                        >  2:460512/1‑150
               GAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCC                                                                                                                                                       >  2:782844/1‑150
                                         cgGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCACTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAG                                                                                                                             <  1:469850/148‑1
                                               AACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGG                                                                                                                       <  2:521111/150‑1
                                                                 TGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTT                                                                                                                    >  1:217562/1‑135
                                                                 TGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTT                                                                                                                    <  2:217562/135‑1
                                                                         GTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAG                                                                                             <  1:250613/150‑1
                                                                                                               AAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCC                                                                                                               <  2:880048/94‑1
                                                                                                               AAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCC                                                                                                               >  1:880048/1‑94
                                                                                                                             GTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                   <  2:977278/44‑1
                                                                                                                             GTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                   >  1:977278/1‑44
                                                                                                                             GTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                        >  1:40478/1‑39
                                                                                                                             GTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                        <  2:40478/39‑1
                                                                                                                                               cctaCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGG                       <  2:710674/146‑1
                                                                                                                                                CTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGA                                                                                                >  2:714553/1‑76
                                                                                                                                                CTTCGCGGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGA                                                                                                <  1:714553/76‑1
                                                                                                                                                      GGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGC                <  2:361540/150‑1
                                                                                                                                                      GGGTAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGC                >  1:656894/1‑150
                                                                                                                                                         TAAACCCGTTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGNGGCTTTNTCACCGCAGTGGNTTTAACCCCCGGCAGGGCAGCCGCCTT             <  1:1017811/150‑1
                                                                                                                                                         TAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTT             <  1:510570/150‑1
                                                                                                                                                         TAAACCCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTT             <  1:797871/150‑1
                                                                                                                                                              CCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTT                                      <  2:622247/120‑1
                                                                                                                                                              CCGCTCCTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTT                                      >  1:622247/1‑120
                                                                                                                                                                    CTACATGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAG  <  2:678002/150‑1
                                                                                                                                                                                                                                                                                                                          
GGCAGCCCCGCGCAAGAAGGCAGCGGCCAAGCCGAAGGCGCCTGCCGAACCCAAGGCGGCTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4573107‑4573275
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgctcctacaTGCGCCTGTGATGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGACAGGCTTAACCGGCAGTAGGCTTTTTCACCGCCCGGGGCTTTTTCACCGCAGTGGGTTTAACCCCCGGCAGGGCAGCCGCCTTGGGTTCGGCAG  <  NC_002947/4573292‑4573148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.