| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1487042 | 24 (0.580) | 8 (0.250) | 7/210 | 2.9 | 27.8% | intergenic (+51/+79) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | = 1487072 | 23 (0.710) | intergenic (+81/+49) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
GACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAA > NC_002947/1486893‑1487189 | gACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGG < 1:21827‑M1/150‑1 (MQ=255)gACAAGGGCAAGCTTGTGGGGCAGGCCGCGCCGGATGACTTCTTCGCCCGGCCGCG‑TG‑GCCTCGACCCTGCCGGCTTCCTCCGCCAGAGCCGGCCTTGCTGCTGATTGGCCTGCTCCAGACCCCTTCGCGGGCACGCCCGCTCCCACAgg < 1:999935/150‑1 (MQ=255) gggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGCCCGGCTGTTCCGATACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAg < 2:796381/150‑1 (MQ=39) ggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattac > 1:380993‑M1/1‑144 (MQ=255) gCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGc < 2:497381/150‑1 (MQ=255) cAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGc > 1:307291/1‑141 (MQ=255) cAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGc < 2:307291/141‑1 (MQ=255) gCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagc > 2:52851‑M1/1‑126 (MQ=255) gATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcct > 1:913588‑M2/1‑147 (MQ=255) tGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgt > 2:611490‑M2/1‑145 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgg < 1:52851‑M1/150‑38 (MQ=255) ttcGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgggagcg < 2:380993‑M1/150‑43 (MQ=255) ccGCCCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTTGCGCTAGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgccc > 1:238946‑M2/1‑129 (MQ=255) gcgcAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCATCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgg < 2:913930‑M2/134‑8 (MQ=255) gcgcAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCATCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgg > 1:913930‑M2/1‑127 (MQ=255) gcggTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGATCCCACAGGTTTAGCGCTGGCTTTGGAGCCTACGGAATGCCTGTGGGAGCGGGCGTGCCtgcgg > 2:849277/4‑149 (MQ=255) aaGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAAcgcg > 1:851968/1‑150 (MQ=255) cTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTACGCACTGGCTTTGCAGCCGCCGTAATTCCTTGGGGAGCGTGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGt < 1:894172/150‑1 (MQ=38) tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGc > 1:1005585/1‑91 (MQ=255) tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGc < 2:1005585/91‑1 (MQ=255) aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaag > 2:475950‑M2/1‑99 (MQ=255) aGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaag < 1:475950‑M2/126‑28 (MQ=255) gCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAt < 2:293525/150‑1 (MQ=255) ccAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTACTTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACACGGCCCCGGGTTTAtt > 2:107454/1‑150 (MQ=255) tGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTcc > 2:933502/1‑150 (MQ=255) aTGCTGTTTGGGGTGCGCGGTAGCCCTTCGCGGGCCCGCCCGCTTCTACAGGTTTAGCGCTGGCTTTGGAGCCTGGGTAAGTCCCGTGGCGGCGGTCGTCCGCGCGAAGGGCCGCAACGCGGCCCGGGGTTTATTTCTCATCctggcttg < 2:988508/150‑3 (MQ=255) aTGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgg > 2:23353‑M1/1‑52 (MQ=255) aTGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgg < 1:23353‑M1/89‑38 (MQ=255) tGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCtggctggc > 2:773715/1‑150 (MQ=255) cTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCGCTGGGTTTATTTCTCTTCCTGGCTGGCAg > 1:905478/1‑150 (MQ=255) gTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGcc > 2:190648/1‑150 (MQ=255) gTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGGAATTACCGGCATCGCCGACCGGACCGCAAAGTGCTCCAACGCGGCCATGGGATTATTTCTCTTCCTGGCTGGCAGcc > 1:381078/1‑150 (MQ=21) cTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgggag > 2:1024443‑M1/1‑40 (MQ=255) cTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgggag < 1:1024443‑M1/80‑41 (MQ=255) cTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAttt < 1:872178/124‑1 (MQ=255) cTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTAttt > 2:872178/1‑124 (MQ=255) tGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGTTGCGGCCCttcgcg > 2:294533/1‑113 (MQ=37) ccTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCa < 1:933502/150‑1 (MQ=255) cTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggct > 2:475950‑M1/1‑27 (MQ=255) cTTCGCGGGCACGCCCGCTCCCACAGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggct < 1:475950‑M1/126‑100 (MQ=255) gggCACGCCCGCTCCCACAGGaattacgcaggctccaaagctagcgcaaaacctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgggcgg > 1:238946‑M1/1‑21 (MQ=255) gggCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCAc > 1:580847/1‑150 (MQ=255) cGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgcggccggtcgaa < 2:380993‑M2/150‑109 (MQ=255) cGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGAt < 2:851968/150‑1 (MQ=255) cTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcag < 1:1024443‑M2/80‑41 (MQ=255) cTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcag > 2:1024443‑M2/1‑40 (MQ=255) ccACAGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgatgggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgc < 2:913930‑M1/134‑128 (MQ=255) ccACAGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgatgggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgc > 1:913930‑M1/1‑7 (MQ=255) ccACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgcggccggtcgaagaagt < 1:52851‑M2/150‑114 (MQ=255) ccACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcat < 1:23353‑M2/89‑53 (MQ=255) ccACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTcctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcat > 2:23353‑M2/1‑37 (MQ=255) cacaGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCtcggctttcggctt > 1:305212/1‑150 (MQ=255) acaGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgcggccggtcgaagaagtca > 2:611490‑M1/1‑5 (MQ=255) aGGaattacgcaggctccaaagccagcgctaaacctgtgggagcgggcgtgcccgcgaagggctgccgcgcagcccaaacagcatcaatgcaggatctggctgaggaacaacttggtccggtcactgcgcggccggtcgaagaagtcatc > 1:913588‑M1/1‑3 (MQ=255) | GACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTG‑‑TTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAA > NC_002947/1486893‑1487189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |