| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5640320 | 25 (0.560) | 11 (0.330) | 9/206 | 2.7 | 29.0% | intergenic (+41/‑69) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | = 5640336 | 35 (1.050) | intergenic (+57/‑53) | PP_4950/PP_4951 | hypothetical protein/EmrB/QacA family drug resistance transporter | |||||
CTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5640144‑5640320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACAGG < NC_002947/5640336‑5640192 CTTGCTGGGCAGCAAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGC > 2:337346/1‑150 TTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCC > 1:954943/1‑150 CCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGCCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCG > 1:294146/1‑129 CCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGCCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCG < 2:294146/129‑1 GAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTT > 2:959529/1‑150 TCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA > 2:1055959/1‑150 GTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG < 1:734082/150‑1 TCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC < 1:959529/150‑1 TCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGC < 1:1055959/150‑1 GTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACGTTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA < 2:271510/138‑1 GTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACGTTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTA > 1:271510/1‑138 TCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGA < 1:955938/110‑1 TCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGA > 2:955938/1‑110 ACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG > 1:505645/1‑96 ACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAG < 2:505645/96‑1 CTTTCGCGGCTAAAGCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGT > 1:346081/1‑150 GCCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGT > 2:860882/1‑150 CCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTGAGGGTCAGGCCTTTGACCA < 2:131175/97‑1 CCGCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTGAGGGTCAGGCCTTTGACCA > 1:131175/1‑97 GCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCA > 1:728682/1‑65 GCTCCTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCA < 2:728682/65‑1 CTACAGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATCGCTGCACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACAGG > 1:815685/1‑150 CTTGCTGGGCAGCCAGCTGGAGGACCTGACCCAGGAGCGCGAGATGATCCTGTCGACCAGTACTTATGGACAGCGCAGTACCGGGTCGAGTCATTTGCCCGGGGCACTGGTCAAAGGCCTGACCCTGACATTGTGACTGGACTTGCCGGCCCTTTCGCGGCTAAAGCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5640144‑5640320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccggccctttcgcggctaaagccgctcctacaGGGGTTACGCGTTCCTTGTAGGAGCGGCTTTAGCCGCGAAAGGGCCGGCAAGTCCAGTCACAATGTCAGGGTCAGGCCTTTGACCAGTGCCCCGGGCAAATGACTCGACCCGGTACTGCGCTGTCCATAAGTACTGGTCGACAGG < NC_002947/5640336‑5640192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |