New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	413997 =	48 (1.080)	8 (0.230)	8/218	3.2	18.6%	intergenic (+14/‑189)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	414083 =	32 (0.900)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTA  >  NC_002947/413853‑414146                                                                                                                                                  |                                                                                                                                                       tgtACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTcg                                                                                                                                                   >  2:85843/1‑150 (MQ=255)     cAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCggg                                                                                                                                               >  1:978114/1‑150 (MQ=255)        aGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                            <  2:527163/150‑1 (MQ=255)        aGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                            <  1:261433/150‑1 (MQ=255)        aGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                            <  1:343793/150‑1 (MQ=255)        aGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCaa                                                                                                                                            >  1:892596/1‑150 (MQ=255)                   cGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCca                                                                                                                                 <  2:721112/150‑1 (MQ=255)                          ccACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTAc                                                                                                                          <  2:54479/150‑1 (MQ=255)                           cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGCTGCGGAACTGTCTGAAATCCGAACACTG‑CACGTTCTTCGGCTCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACt                                                                                                                         <  1:127149/150‑1 (MQ=255)                           cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTAtt                                                                                                                                                     >  2:751667/1‑122 (MQ=255)                           cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTAtt                                                                                                                                                     <  1:751667/122‑1 (MQ=255)                           cACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAgggatt                                                                                                                         <  2:329507/150‑5 (MQ=255)                                    gCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCgg                                                                                                                                                <  1:323032/118‑1 (MQ=255)                                    gCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCgg                                                                                                                                                >  2:323032/1‑118 (MQ=255)                                    gCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGcc                                                                                                               >  1:172521/1‑150 (MQ=255)                                           aGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCGACAGGTACTGCACA‑GGCGCTGAGCa                                                                                                        >  1:78885/1‑150 (MQ=255)                                             aaGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcac                                                                                                                                <  1:692910/125‑1 (MQ=255)                                             aaGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCcac                                                                                                                                >  2:692910/1‑125 (MQ=255)                                             aaGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAgt                                                                                                      <  1:806692/150‑1 (MQ=255)                                                gaggCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGtgtg                                                                                                   <  2:477231/150‑1 (MQ=255)                                                gaggCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCACGCTCGCACAGGTACTGCACA‑TTCCCTGAGCAGtgtg                                                                                                   >  2:327457/1‑150 (MQ=255)                                                    ccGGGGTGATGGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCT‑CCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATc                                                                                              <  2:297436/150‑1 (MQ=255)                                                          tGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCtgt                                                                                         <  1:25394/150‑1 (MQ=255)                                                          tGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCtgt                                                                                         <  2:403833/150‑1 (MQ=255)                                                            aTCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAgt                                                                                                      >  2:873678/1‑135 (MQ=255)                                                            aTCGATGCGGCACAGTCTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAgt                                                                                                      <  1:873678/135‑1 (MQ=255)                                                                  gCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCgg                                                                                 <  2:335043/150‑1 (MQ=255)                                                                     gCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCt                                                                              >  2:695295/1‑150 (MQ=255)                                                                      cacaGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCtt                                                                             <  1:695295/150‑1 (MQ=255)                                                                          gTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGccc                                                                         <  2:585129/150‑1 (MQ=255)                                                                           tttG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCcg                                                                        >  1:544456/1‑150 (MQ=255)                                                                                      aaCGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                     >  1:426192/1‑127 (MQ=255)                                                                                      aaCGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGa                                                                                     <  2:426192/127‑1 (MQ=255)                                                                                       aCGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCGGTGGGAGCGGGCTTGCCCGCGAATAGGCCa                                                             >  1:684096/1‑150 (MQ=255)                                                                                                  tGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTa                                                  <  1:85843/150‑1 (MQ=255)                                                                                                      gcgcATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACt                                              <  1:985404/150‑1 (MQ=255)                                                                                                               gggTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCcac                                     >  2:798418/1‑150 (MQ=255)                                                                                                                  tGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATa                                  <  2:172521/150‑1 (MQ=255)                                                                                                                     gTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCa                                                                                                        <  2:494369/77‑1 (MQ=255)                                                                                                                     gTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCa                                                                                                        >  1:494369/1‑77 (MQ=255)                                                                                                                         gggttAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTACCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGaa                           <  2:78885/147‑1 (MQ=255)                                                                                                                          gTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAat                          >  1:320458/1‑150 (MQ=255)                                                                                                                            ttAAGCTGATACCGTGTTGGCTTATTCGCGGGAAAGACCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAatat                        <  2:978114/150‑1 (MQ=255)                                                                                                                                gCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAag                    <  2:544456/150‑1 (MQ=255)                                                                                                                                      aCCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGa              <  2:892596/150‑1 (MQ=255)                                                                                                                                               gCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCt     >  1:366002/1‑150 (MQ=255)                                                                                                                                                cTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGGGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTg    >  2:34876/1‑150 (MQ=255)                                                                                                                                                 ttATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGt   >  1:595944/1‑150 (MQ=255)                                                                                                                                                  tATTCGCGGGCAAGCCCGCTCCCACAGGGATTGCACACTGCTCAGGGC‑CTGTGCAGTACCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTa  >  1:767783/1‑150 (MQ=14)                                                                                                                                                  |                                                                                                                                                       TGTACAAAGCGTTCCGCTCGGCCTCCCACCGCCAGGCCCTGCAGAAGGAGGCCGGGGTGATCGATGCGGCACAGTTTG‑CCGATGAACGCCGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACA‑GGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTA  >  NC_002947/413853‑414146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.