New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 661596	31 (1.410)	3 (0.140)	3/246	NT	9.7%	intergenic (+103/+24)	PP_0568/PP_0569	hypothetical protein/MATE efflux family protein
	?	NC_002947	= 661622	26 (1.230)					coding (1336/1338 nt)	PP_0569	MATE efflux family protein

CGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661445‑661596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCC  <  NC_002947/661622‑661474                                                                                                                                                                                                                                                                                                               CGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTC                                                                                                                                                         <  2:499671/150‑1   TGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC                                                                                                                                                       <  2:302141/150‑1                                         TGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGC                                                                                                                 <  2:101997/150‑1                                                                                                                                 CATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGAC                                                                                                                        >  1:266758/1‑55                                                                                                                                 CATGTGGGAGCGGCCTTGCGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGAC                                                                                                                        <  2:266758/55‑1                                                                                                                                                   gGTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACA       <  1:343408/149‑1                                                                                                                                                    GTCGCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCGCATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAG      <  1:320423/150‑1                                                                                                                                                       GCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCC   >  1:140517/1‑150                                                                                                                                                       GCTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCGCCCACAGGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGGCGCGAAATGAGGGCGACGCCCTCACATGCTCCCAGCCATACACAGTCC   >  2:538807/1‑150                                                                                                                                                        CTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCC  >  1:325512/1‑150                                                                                                                                                                                                                                                                                                               CGTGCGGCGGGCTGGCGAGTATCCCCATTGGGACTGTGTATGGCTGTGAGCATGTGAGGGCTTCGCCCTCATTTCGCGACACAAGGCCGCTCCCACAGTGACCGCGAAAGCAGGCCGACCCGCTATCCCATGTGGGAGCGGCCTTGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/661445‑661596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgcTGATTGGGGCCGCTTTGCGGCCCATCGCGACGCAAGGCCGCTCCCACATGGGATAGCGGGTCGGCCTGCTTTCGCGGTCACTGTGGGAGCGGCCTTGTGTCGCGAAATGAGGGCGAAGCCCTCACATGCTCACAGCCATACACAGTCCC  <  NC_002947/661622‑661474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.