| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2048837 = | 9 (0.410) | 3 (0.160) | 3/222 | NT | 26.3% | intergenic (+33/+106) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein |
| ? | NC_002947 | 2048928 = | 9 (0.470) | intergenic (+124/+15) | PP_1821/PP_1822 | glutathione S‑transferase family protein/hypothetical protein | |||||
TGGATGTATGAGTCCAAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2049002‑2048837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTGGC > NC_002947/2048928‑2049076 TGGATGTATGAGTCCAAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCAC < 2:336121/150‑1 ATGTATGAGTCCAAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCC > 1:224053/1‑150 AGTCCAAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCC > 2:535718/1‑150 AAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAG > 2:160272/1‑150 CTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTT > 1:407792/1‑150 GCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATA > 2:253928/1‑150 ACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTT < 2:407792/150‑1 CGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCTCAGGCATGGCACTTTCACCCGGCCGCCACCT < 1:336121/150‑1 CACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAG > 1:231097/1‑83 CACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAG < 2:231097/83‑1 GGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTGGC < 2:142949/150‑1 TGGATGTATGAGTCCAAGGCAATCATCGCTTACCTGGATGAGCGGTTTGCCGCCATCTGACTGACGCTGCAGATCCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2049002‑2048837‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaaggGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGGGCCTGGC > NC_002947/2048928‑2049076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |