New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 129985	35 (1.590)	4 (0.190)	4/250	NT	10.6%	coding (2463/2748 nt)	polA	DNA polymerase I
	?	NC_002947	= 130008	33 (1.530)					coding (2486/2748 nt)	polA	DNA polymerase I

GGACTATATCGACCGCTACTTTGCCCGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCAGGTGCACGACGAA  >  NC_002947/129838‑130132                                                                                                                                                     |                                                                                                                                                    ggACTATATCGACCGCTACTTTGCCCGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGCTGCAAG‑GGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAAccctgccct                                                                                                                                                   <  1:521039/150‑1 (MQ=255) ggACTATATCGACCGCTACTTTGCCCGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAAccctgccct                                                                                                                                                   <  1:418819/150‑1 (MQ=255)                    tttGCCCGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAgcgc                                                                                                                                >  2:406329/1‑150 (MQ=255)                         ccGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACggc                                                                                                                           <  2:470796‑M2/150‑4 (MQ=255)                                      gTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCg                                                                                                              >  2:166106/1‑150 (MQ=255)                                       tGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCCATGCCAAGAAACCTCCGGTGCGCTCGGCGCCCGGGCGCAGggcagggttcttggcaa                                                                                                             <  2:516281‑M2/150‑18 (MQ=255)                                            gCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAg                                                                                                        >  2:211721/1‑150 (MQ=255)                                              cTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAAc                                                                                                                    <  2:34195/136‑1 (MQ=255)                                              cTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCATGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAAc                                                                                                                    >  1:34195/1‑136 (MQ=255)                                               tACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGt                                                                                                     <  2:26327/150‑1 (MQ=255)                                                  aTGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCGTGCGCTCGGCGCCCTTGCGCAGggcagggttcttggcattgatgtctggc                                                                                                  >  1:516281‑M2/1‑122 (MQ=255)                                                   tGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTActg                                                                                                 >  2:497238/1‑150 (MQ=255)                                                       gcgcACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACtgctgc                                                                                             >  2:194/1‑150 (MQ=255)                                                       gcgcACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACtgctgc                                                                                             >  2:303903/1‑150 (MQ=255)                                                       gcgcACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACtgctgc                                                                                             <  2:461387/150‑1 (MQ=255)                                                                    ccAGGCGGCCGAGCAAGGCTTTGTCGAAACGCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGCGCGCACGGCGATCAACGCCCCGGTGCAGGGTACTGCTGACGACATAATCaa                                                                                 >  2:192559/1‑150 (MQ=255)                                                                    ccAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAGCCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCaa                                                                                 <  1:111218/150‑1 (MQ=255)                                                                    ccAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATaaa                                                                                 >  2:192643/1‑150 (MQ=255)                                                                        gcggcCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCATCGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCgg                                                                             <  1:537168/150‑1 (MQ=255)                                                                             cGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAgc                                                                                                                                  >  1:17286/1‑92 (MQ=255)                                                                             cGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAgc                                                                                                                                  <  2:17286/92‑1 (MQ=255)                                                                             cGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCAt                                                                        <  2:197410/150‑1 (MQ=255)                                                                                 cAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTc                                                                    >  1:325592/1‑150 (MQ=255)                                                                                    ggCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAg                                                                 <  1:470796/150‑1 (MQ=255)                                                                                             gAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAAc                                                        >  2:479222/1‑150 (MQ=255)                                                                                                  ccTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCgtgcgctcggcgcccttgcgcaggg                                                                                                                            >  1:529920‑M1/1‑52 (MQ=255)                                                                                                  ccTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCgtgcgctcggcgcccttgcgcaggg                                                                                                                            <  2:529920‑M1/77‑26 (MQ=255)                                                                                                      tttGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGc                                               <  2:126406/150‑1 (MQ=255)                                                                                                             gccgccTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCg                                        <  1:479222/150‑1 (MQ=255)                                                                                                                       cTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCAGATGCAGGGTACTGCTGCCGACATCAGCAAGCGGTCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGc                              <  1:211721/150‑1 (MQ=255)                                                                                                                        ttGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGGGAGCGGGCTGGATGcc                             >  2:113385/1‑150 (MQ=255)                                                                                                                          gCCAGACATCAATGCCAAGAACCCTGCCctgcgcaagggcgccgagcgcacggcagggttcttggcattgatgtctggcaagtacaggcggcggccaaacagggtttcgacaaagccttgctcggccgcctgggcgcgggtgcgctccat                           >  1:516281‑M1/1‑28 (MQ=255)                                                                                                                           ccAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCgg                          >  2:482671/1‑150 (MQ=255)                                                                                                                            cAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGt                                                    <  2:285199/123‑1 (MQ=255)                                                                                                                            cAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGt                                                    >  1:285199/1‑123 (MQ=255)                                                                                                                               aCATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGa                      >  1:499202/1‑150 (MQ=255)                                                                                                                                 aTCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATc                    <  1:166106/150‑1 (MQ=255)                                                                                                                                     ttgCCAAGAACCCTGCCctgcgcccgggcgccgagcgcaccggaggtttcttggcatggatgtctggcaagtacaggcggcggccaaacagggtttcgacaaagccttgctcggccgcctgggcgcgggtgcgctccatgtaggccagca                <  2:516281‑M1/149‑134 (MQ=255)                                                                                                                                      tGCCAAGAACCCTGCCCTGCGCAAGGGGGCTGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCa               >  1:526446/1‑150 (MQ=255)                                                                                                                                       gCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCAg              <  1:482671/150‑1 (MQ=255)                                                                                                                                          aaGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGtt                                                   <  2:339416/110‑1 (MQ=255)                                                                                                                                          aaGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGtt                                                   >  1:339416/1‑110 (MQ=255)                                                                                                                                               ccctgccctgCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCAGGTGCacga      >  1:314744/1‑150 (MQ=255)                                                                                                                                                cctgccctgcGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCAGGTGCacgac     <  2:499202/150‑1 (MQ=255)                                                                                                                                                   gCCgtgcgctcggcgcccttgcgcagggcagggttcttggcattgatgtctggcaagtacaggcggcggccaaacagggtttcgacaaagccttgctcggccgcctgggcgcgggtgcgctccatgtaggccagcacgcctgggtagcgg  <  2:470796‑M1/150‑148 (MQ=255)                                                                                                                                                    ccctgcGCAAGGGCGCCGAGCGCACggcagggttcttggcattgatgtctggcaagtacaggcggcggccaaacagg                                                                          >  1:529920‑M2/1‑25 (MQ=255)                                                                                                                                                    ccctgcGCAAGGGCGCCGAGCGCACggcagggttcttggcattgatgtctggcaagtacaggcggcggccaaacagg                                                                          <  2:529920‑M2/77‑53 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGACTATATCGACCGCTACTTTGCCCGCTACCCAGGCGTGCTGGCCTACATGGAGCGCACCCGCGC‑CCAGGCGGCCGAGCAAGGCTTTGTCGAAACCCTGTTTGGCCGCCGCCTGTACTTGCCAGACATCAATGCCAAGAACCCTGCCCTGCGCAAGGGCGCCGAGCGCACGGCGATCAACGCCCCGATGCAGGGTACTGCTGCCGACATCATCAAGCGGGCCATGGTCAAGGTAGATAACTGGTTGAGCGAGAGCGGGCTGGATGCCCGGGTGATCCTGCAGGTGCACGACGAA  >  NC_002947/129838‑130132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.