New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1113981 =	16 (0.730)	3 (0.140)	3/246	NT	16.1%	coding (831/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F
	?	NC_002947	1114015 =	16 (0.760)					coding (797/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F

CCGGGCGCGGTTTTTTCATGCCTGTGATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCAC  >  NC_002947/1113843‑1114122                                                                                                                                           |                                                                                                                                              ccaggCGCGGTTTTTTCATGCCTGTGATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGActtctt                                                                                                                                    >  1:562880/4‑150 (MQ=255)                         actgtggtgcgagggtggcgaaatccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAg                                                                                                            >  1:262852‑M1/115‑150 (MQ=255)                                                tccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGccc                                                                                                                 >  1:368249‑M1/92‑122 (MQ=255)                                                tccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGccc                                                                                                                 <  2:368249‑M1/31‑1 (MQ=255)                                                                   aaGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCg                                                                  >  1:358101/1‑150 (MQ=255)                                                                           tCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATTCCCGGCGGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGt                                                          >  1:293449/1‑150 (MQ=255)                                                                                     cATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCt                                                                                                      <  2:49284/96‑1 (MQ=255)                                                                                     cATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCt                                                                                                      >  1:49284/1‑96 (MQ=255)                                                                                      aTGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGcc                                                                                                                  <  2:87666/83‑1 (MQ=255)                                                                                      aTGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGcc                                                                                                                  >  1:87666/1‑83 (MQ=255)                                                                                           gCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCCGGGTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGcc                                          >  1:61454/1‑150 (MQ=255)                                                                                                        cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTgg                                >  1:427088/1‑147 (MQ=255)                                                                                                        cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTgg                                <  2:427088/147‑1 (MQ=255)                                                                                                        cccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTg                             >  1:403488/1‑150 (MQ=255)                                                                                                             gCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCGGGGTGACaaa                        >  1:223485/1‑150 (MQ=255)                                                                                                                               tACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTAccc                                                                   >  2:273317/1‑89 (MQ=255)                                                                                                                               tACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTAccc                                                                   <  1:273317/89‑1 (MQ=255)                                                                                                                                   gCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGcac  >  2:141842/1‑150 (MQ=255)                                                                                                                                   gCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGACACCCTCGcac  <  2:562880/150‑1 (MQ=255)                                                                                                                                           |                                                                                                                                              CCGGGCGCGGTTTTTTCATGCCTGTGATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCAC  >  NC_002947/1113843‑1114122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.