New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2057866	15 (0.680)	3 (0.170)	3/208	NT	20.6%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057906	11 (0.620)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein

GATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCA  >  NC_002947/2057717‑2058013                                                                                                                                                      |                                                                                                                                                    gATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTAC                                                                                                                                                     <  2:478720‑M1/150‑1 (MQ=255)          ttttGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTgc                                                                                                                                            <  1:537023/150‑1 (MQ=255)                      ttGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAg                                                                                                                                <  2:446061/150‑1 (MQ=255)                      ttGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAg                                                                                                                                >  1:446061/1‑150 (MQ=255)                       tGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACGCCTTGATGCCTAAgg                                                                                                                               <  2:420219/150‑1 (MQ=255)                            ttGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCTATGCCTAAGggcggc                                                                                                                          <  1:72763/150‑1 (MQ=255)                            ttGTACGGCAGCGAGCAGGGCATGCCGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGggcggc                                                                                                                          <  1:62044/150‑1 (MQ=255)                                      gCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCgtcg                                                                                                                >  2:84997/1‑150 (MQ=255)                                            aGGGCATGCAGGCGCTGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATGGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgta                                                                                                          >  1:94967‑M2/1‑147 (MQ=255)                                            aGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCTGGTGAACCCGCTCCTACATTGACTGCGCGGATCCTAAGGGCGGCGCAACCGTCGGTCgta                                                                                                          >  1:104046‑M2/1‑147 (MQ=255)                                            aGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgta                                                                                                          >  2:253525‑M2/1‑147 (MQ=255)                                                   gCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAAc                                                                                                                     <  2:93471/132‑1 (MQ=255)                                                   gCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAAc                                                                                                                     >  1:93471/1‑132 (MQ=255)                                                   gCAGGCGCGGTTTACGGGATATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgg                                                                                                   >  1:28495‑M2/1‑140 (MQ=255)                                                    cAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCGTTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcggg                                                                                                  <  2:414516‑M1/150‑52 (MQ=255)                                                          cgGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacc                                                                                            >  1:485562‑M2/1‑133 (MQ=255)                                                          cgGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGGTATCACATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacc                                                                                            >  1:317605‑M2/1‑133 (MQ=255)                                                                aCGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaa                                                                                      >  1:423440‑M2/1‑127 (MQ=255)                                                                   ggCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTATGAGCGGGTTCACCCGCGAagag                                                                                   >  2:309623/1‑150 (MQ=255)                                                                              tGCGCGGGCATTTCGTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAgg                                                                        <  1:84997/150‑1 (MQ=255)                                                                                   gggCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATa                                                                   >  2:145720/1‑150 (MQ=255)                                                                                        tttATTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCCAGGGTGAACCCGCTCCTACATTCTCTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACAccc                                                              <  1:96640/150‑1 (MQ=39)                                                                                            ttGGTATCGACGAGCTGTACTCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCa                                                          <  2:371242/150‑1 (MQ=255)                                                                                            ttGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgt                                                                                                           >  1:550123‑M1/1‑59 (MQ=255)                                                                                            ttGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgt                                                                                                           <  2:550123‑M1/101‑43 (MQ=255)                                                                                                tATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCgg                                                      >  1:514425/1‑150 (MQ=255)                                                                                                                                ttCGCGGGTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgt                      >  1:423440‑M1/1‑23 (MQ=255)                                                                                                                                      ggTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgtgataccagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccg                >  1:317605‑M1/1‑17 (MQ=255)                                                                                                                                      ggTGAACCCGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccg                >  1:485562‑M1/1‑17 (MQ=255)                                                                                                                                            cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaacgcccgcgcagtcacatcgcccgtaaaccgcgcctg          <  2:414516‑M2/150‑100 (MQ=255)                                                                                                                                             ccGCTCCTACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatatcccgtaaaccgcgcctgc         >  1:28495‑M1/1‑10 (MQ=255)                                                                                                                                                    tACgaccgacggttgcgccgcccttaggcatcgcgcagtccatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaacagcgcctgcatgccct  >  1:94967‑M1/1‑3 (MQ=255)                                                                                                                                                    tACgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccct  >  2:253525‑M1/1‑3 (MQ=255)                                                                                                                                                    tACgaccgacggttgcgccgcccttaggatccgcgcagtcaatgtaggagcgggttcaccagcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccct  >  1:104046‑M1/1‑3 (MQ=255)                                                                                                                                                     aCATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaa                                                  <  2:550123‑M2/101‑60 (MQ=255)                                                                                                                                                     aCATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaa                                                  >  1:550123‑M2/1‑42 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCA  >  NC_002947/2057717‑2058013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.