New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4714580 =	23 (1.040)	4 (0.190)	4/248	NT	14.0%	coding (652/891 nt)	PP_4172	hypothetical protein
	?	NC_002947	4714619 =	27 (1.260)					coding (691/891 nt)	PP_4172	hypothetical protein

GGTCCGACCCACGTGACAACAGGCCCCTGCAGCACCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTG  >  NC_002947/4714434‑4714727                                                                                                                                                   |                                                                                                                                                    ggTCCGACCCACGTGACAACAGGCCCCTGCAGCACCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGcc                                                                                                                                                  <  1:481877/150‑1 (MQ=255) ggTCCGACCCACGTGACAACAGGCCCCTGCAGCACCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGcc                                                                                                                                                  <  1:425568/150‑1 (MQ=255)           aCGTGACAACAGGCCCCTGCAGCACCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCgg                                                                                                                                        >  2:211846/1‑150 (MQ=255)                               agcaCCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGccc                                                                                                                    >  2:23823/1‑150 (MQ=255)                                         gggCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTAc                                                                                                          <  2:164452/150‑1 (MQ=255)                                             aaCAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTAc                                                                                                      >  2:140074/1‑150 (MQ=255)                                                                          cccTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTgg                                                                              <  1:108042/145‑1 (MQ=255)                                                                          cccTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTgg                                                                              >  2:108042/1‑145 (MQ=255)                                                                                       aaCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                            >  2:226759/1‑150 (MQ=255)                                                                                       aaCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTc                                                            <  1:211846/150‑1 (MQ=255)                                                                                        aCTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCg                                                           <  1:276259/150‑1 (MQ=255)                                                                                          ctggtcgagcaactggtcgagcacccacagccagtcgtcctggtcgctgtaggtactGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTg                                                                                                                  <  2:201910‑M1/36‑1 (MQ=255)                                                                                          ctggtcgagcaactggtcgagcacccacagccagtcgtcctggtcgctgtaggtactGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTg                                                                                                                  >  1:201910‑M1/58‑93 (MQ=255)                                                                                             aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                         >  1:256627/1‑147 (MQ=255)                                                                                             aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                         <  2:256627/147‑1 (MQ=255)                                                                                             aaGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAg                                                      >  2:154469/1‑150 (MQ=255)                                                                                                gagcaactggtcgagcacccacagccagtcgtcctggtcgctgtaggtactGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGcc                                                                                                               <  1:554118‑M1/39‑1 (MQ=255)                                                                                                gagcaactggtcgagcacccacagccagtcgtcctggtcgctgtaggtactGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGcc                                                                                                               >  2:554118‑M1/52‑90 (MQ=255)                                                                                                  tGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCtg                                                                                 >  1:193529/1‑118 (MQ=255)                                                                                                  tGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCtg                                                                                 <  2:193529/118‑1 (MQ=255)                                                                                                   gCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                         >  1:332823/1‑141 (MQ=255)                                                                                                   gCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGAc                                                         <  2:332823/141‑1 (MQ=255)                                                                                                    cAAAAAAGCTTCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGa                                               <  1:23823/150‑1 (MQ=255)                                                                                                                 gTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCcgcg                                  >  2:310776/1‑150 (MQ=255)                                                                                                                  ttGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCgcgc                                 >  1:542428/1‑150 (MQ=255)                                                                                                                  ttGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTGCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCgcgc                                 >  2:502713/1‑150 (MQ=255)                                                                                                                       cAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCt                            <  1:226759/150‑1 (MQ=255)                                                                                                                          ttATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTa                         >  1:474522/1‑150 (MQ=255)                                                                                                                          ttATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTa                         >  2:564685/1‑150 (MQ=255)                                                                                                                                              tGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCa     >  2:248865/1‑150 (MQ=255)                                                                                                                                                 tCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTg  <  1:564685/150‑1 (MQ=255)                                                                                                                                                 tCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACAAGTTGCTCGACCAGCCGCCGAGGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTg  >  2:17169/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGTCCGACCCACGTGACAACAGGCCCCTGCAGCACCTGCTGGGCAACAGCGATGTGCTCCTGGGCCTGGACGACCCTGACTTGTACAACTCCAAGACTGCAAAAAACCTGCTGTTGAGCAGTTATGGCCGGCAGATGGCACTGATCGGCCCGAACGCCGGCTTCGTTCGCGCCGGCGCCCTGGCCAGTACCTACAGCGACCAGGACGACTGGCTGTGGGTGCTCGACCAGTTGCTCGACCAGCCGCCGACGCGCTGGCCGCGCAGCCTGTACCCGGTGCGTTACGGCGTCAGTG  >  NC_002947/4714434‑4714727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.