New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1341033	26 (1.180)	3 (0.140)	3/246	NT	11.8%	coding (242/870 nt)	PP_1165	hypothetical protein
	?	NC_002947	= 1341066	20 (0.940)					coding (209/870 nt)	PP_1165	hypothetical protein

CTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGCTGGCGCCCAAC  >  NC_002947/1340928‑1341215                                                                                                                                           |                                                                                                                                                      cTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCa                                                                                                                                            <  2:147358/150‑1 (MQ=255)         cGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGtt                                                                                                                                    <  2:195515/150‑1 (MQ=255)           tCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTgg                                                                                                                                  >  1:417865/1‑150 (MQ=255)                     tCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGgcgc                                                                                                                        >  1:332518/1‑150 (MQ=255)                       gCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGTGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCa                                                                                                                      <  2:295006/150‑1 (MQ=255)                                  gggtgCTCCACCTGCCAGGCCTGCTGCCCGGCACTGCCATGAATCGGGTAAGTGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGCCGGGCAAAGTCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCag                                                                                                           <  1:384622/149‑1 (MQ=255)                                             cTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGcgtcg                                                                                                >  1:16176/1‑150 (MQ=255)                                                      ctgctgCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTAcc                                                                                       >  2:310760/1‑150 (MQ=255)                                                                gCACTGCCATGTATCGGGCAAGCGTCATGCCCGGTATTGGGTGCCAGTTCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGt                                                                             <  2:131939/150‑1 (MQ=255)                                                                gCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGt                                                                             >  1:519584/1‑150 (MQ=255)                                                                        aTGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAg                                                                     <  2:56594/150‑1 (MQ=255)                                                                                ggTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCGCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAAt                                                             <  2:20494/150‑1 (MQ=255)                                                                                              ccGGTATTGGGTGCCAGTGCCTGCCGCCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagca                                                              >  1:337890‑M2/1‑46 (MQ=255)                                                                                              ccGGTATTGGGTGCCAGTGCCTGCCGCCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagca                                                              <  2:337890‑M2/135‑90 (MQ=255)                                                                                                  tATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCcacccaataccgggcatgacccttacccgatccatggcagtgcctggcagcaggcctggcaggtggagcaccacagtgaacagcgagcacggctgacgctagacagtg                                           <  2:69858‑M2/150‑109 (MQ=255)                                                                                                    ttGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCg                                         >  1:450469/1‑150 (MQ=255)                                                                                                        gTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCg                                     >  1:216796/1‑150 (MQ=255)                                                                                                            cAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCttt                                 >  2:527353/1‑150 (MQ=255)                                                                                                                        gcccTCGGGTTGGGGAAAGCCAGCGTCGCGAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGGCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGGAGCAGGGCTTGCCCGGTCGCTTTCACTTCCCGGtt                     <  2:206178/149‑1 (MQ=255)                                                                                                                              gggtcgggCAAAGCCACTCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACAAg               >  2:162452/1‑150 (MQ=255)                                                                                                                                gtcgggCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGc             <  2:519584/150‑1 (MQ=255)                                                                                                                                   gggCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGc             <  2:331408/147‑1 (MQ=255)                                                                                                                                   gggCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGc             >  1:331408/1‑147 (MQ=255)                                                                                                                                           ccACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGCTGGCGCCCAAc  >  2:558896/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                                      CTGTCTAGCGTCAGCCGTGCTCGCTGTTCACTGTGGTGCTCCACCTGCCAGGCCTGCTGCCAGGCACTGCCATGGATCGGGTAAGGGTCATGCCCGGTATTGGGTGCCAGTGCCTGCCACCCCTCGGGTCGGGCAAAGCCACCCTCGCCAATGCGGTTGGACCAAGGCGCCAGTGGGTAGCAGGCGAGGCGTCGTGGCGTACCACTTTCAAGTGCGGCCAGGTCGGAATGGCGCAGCAGCGCTTGCCCGGTCGCTTTCACTTCCCAGTTGACCAGGCTGGCGCCCAAC  >  NC_002947/1340928‑1341215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.