New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4604719	23 (1.040)	4 (0.190)	4/244	NT	14.1%	coding (89/1767 nt)	PP_4077	hypothetical protein
	?	NC_002947	= 4604733	27 (1.290)					coding (103/1767 nt)	PP_4077	hypothetical protein

CGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACTGTGGCCCAACTACCTG  >  NC_002947/4604597‑4604867                                                                                                                                           |                                                                                                                                       cGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGAccc                                                                                                                           >  2:332176/1‑150 (MQ=255) cGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGAccc                                                                                                                           >  1:338759/1‑150 (MQ=255)          ccGCTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGa                                                                                                                  >  1:18060/1‑150 (MQ=255)             cTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCg                                                                                                               >  1:278204/1‑150 (MQ=255)                 acCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTg                                                                                                           >  1:454189/1‑150 (MQ=255)                 acCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTg                                                                                                           >  1:309351/1‑150 (MQ=255)                 acCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGCCTTGCCTAG‑CA‑GCcgggcaagctgggggttgt                                                                                                                     <  1:483049‑M2/140‑20 (MQ=255)                 acCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGCCTTGCCTAG‑CA‑GCcgggcaagctgggggttgt                                                                                                                     >  2:483049‑M2/1‑121 (MQ=255)                    cGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATg                                                                                                        >  2:157502/1‑150 (MQ=255)                         gAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGc                                                                                                   <  2:268028/150‑1 (MQ=255)                               aCCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGc                                                                                             <  1:332176/150‑1 (MQ=255)                                 ccATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGt                                                                                           <  1:157502/150‑1 (MQ=255)                                                   gATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTc                                                                         <  2:309351/150‑1 (MQ=255)                                                     ttCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCgg                                                                       <  2:385892/150‑1 (MQ=255)                                                                        aCCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGAcc                                                    <  2:454189/150‑1 (MQ=255)                                                                          cTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTg                                                  >  2:144848/1‑150 (MQ=255)                                                                             cACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCa                                               >  1:253520/1‑150 (MQ=255)                                                                                gAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGaa                                            >  1:263028/1‑150 (MQ=255)                                                                                gAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGaa                                            >  1:16336/1‑150 (MQ=255)                                                                                gAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGaa                                            <  1:144848/150‑1 (MQ=255)                                                                                    tGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTca                                        <  2:278204/150‑1 (MQ=255)                                                                                     gagacccGACTTCTCCAAGGATCACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTcac                                       <  2:263028/144‑1 (MQ=37)                                                                                           cGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCacccaccc                                 <  2:496106/150‑1 (MQ=255)                                                                                                          cAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACt                  <  2:16336/150‑1 (MQ=255)                                                                                                               cccAGCTTGCCCGGCT‑GC‑TAGGCAAGGcgggcaagctgggggttgtccttggcgaagtcgtttcccaactcgtgcaggtaacgcagttcttc                                                                       >  2:257071‑M2/1‑27 (MQ=255)                                                                                                               cccAGCTTGCCCGGCT‑GC‑TAGGCAAGGcgggcaagctgggggttgtccttggcgaagtcgtttcccaactcgtgcaggtaacgcagttcttc                                                                       <  1:257071‑M2/92‑66 (MQ=255)                                                                                                                          cGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACTGTGGCCCAACTAc     >  2:271261/1‑147 (MQ=255)                                                                                                                          cGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACTGTGGCCCAACTAc     <  1:271261/147‑1 (MQ=255)                                                                                                                          cGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACTGTGGCCCAACTACCTg  >  1:453593/1‑150 (MQ=255)                                                                                                                                 c‑tAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTg                                                                                              >  2:1496/1‑52 (MQ=255)                                                                                                                                 c‑tAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTg                                                                                              <  1:1496/52‑1 (MQ=255)                                                                                                                                           |                                                                                                                                       CGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAGGACAGATTCAGCGAAGAACTGCGTTACCTGCACGAGTTGGGAAACGACTTCGCCAAGGACAACCCCCAGCTTGCCCGGCT‑GC‑TAGGCAAGGCGGGCAGCGACCCCGATGTCGAGCGGTTGATGGAAGCCTTTGCGTTTCTAACGGCCAAGCTTCGGCTGAAGCTGGAAGATGACCTGCCAGAACTCACCCACCCCATGCTGCAGATACTGTGGCCCAACTACCTG  >  NC_002947/4604597‑4604867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.