| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,321,111 | A→G | 22.7% | intergenic (‑303/‑115) | PP_3791 ← / → PP_5629 | site‑specific recombinase/protease/amidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,321,111 | 0 | A | G | 22.7% | 34.2 / 7.4 | 22 | intergenic (‑303/‑115) | PP_3791/PP_5629 | site‑specific recombinase/protease/amidase |
| Reads supporting (aligned to +/- strand): ref base A (8/9); new base G (2/3); total (10/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.52e-01 | |||||||||||
GCGTGTTATCTAAGATGCGTCAGCTTCGCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGATACTGACACCGGGTTT > NC_002947/4320976‑4321260 | gCGTGTTATCTAAGATGCGTCAGCTTCGCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGGATTCAATATcgaaa < 2:521895/150‑4 (MQ=255) gCGTCAGCTTCGCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCAtcct > 1:254199/1‑150 (MQ=255) cTTCGCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCt > 2:82372/1‑150 (MQ=255) gCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGa < 1:510957/150‑1 (MQ=255) tCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAg > 1:316259/1‑150 (MQ=255) tCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAAc < 2:520077/150‑1 (MQ=255) gTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGc < 1:243637/131‑1 (MQ=255) gTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGc > 2:243637/1‑131 (MQ=255) tcaatcaaGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGCCCCTGGTGCCAGCAGCACAGTATTCTTCATTTCGATATTGAATCTAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTgct > 2:115246/1‑148 (MQ=255) aaGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGt < 2:254199/150‑1 (MQ=255) ggCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGaa < 2:112004/64‑1 (MQ=255) ggCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGaa > 1:112004/1‑64 (MQ=255) ccTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTg > 2:123343/1‑150 (MQ=255) gcagcaCAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCa < 1:123343/150‑1 (MQ=255) cacaGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCAcgcg > 1:373827/1‑150 (MQ=255) acaGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCCCTAGCTGCACCGTGCTTTCTGCTTGAAGCCCCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGt < 2:33803/150‑1 (MQ=255) cTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACACTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGa < 2:316259/150‑1 (MQ=255) tAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGATa < 1:82372/150‑1 (MQ=255) gcGATATTGGATTCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGa < 1:376243/142‑1 (MQ=255) gcGATATTGGATTCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGa > 2:376243/2‑143 (MQ=255) tatTGGATTCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTgg > 1:416214/1‑117 (MQ=255) tatTGGATTCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTgg < 2:416214/117‑1 (MQ=255) aaTCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGATACTGACACCGGGttt < 1:277951/150‑1 (MQ=255) | GCGTGTTATCTAAGATGCGTCAGCTTCGCTTTCGCCCTCATAATCGTAGTCAATCAAGCTTGCCGACACTTGACAAATTTCAAATTACCCTAAGGCCCTGGTGCCAGCAGCACAGTATTCTTAATTTCGATATTGAATCCAATATCGCGACCGGGAACATCATCCTCCCTTCTATGAGCACCGCTAGCTGAACCTTGATGTCTGTTTGAAGCCGCCGTACGCTATCGGCATTCATGGAGGAATCTGGCTGATGGCACGCGTGGGTTTGATACTGACACCGGGTTT > NC_002947/4320976‑4321260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |