| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,388,541 | A→G | 12.9% | intergenic (‑46/‑236) | PP_1209 ← / → dps | cold‑shock protein/DNA‑binding stress protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,388,541 | 0 | A | G | 12.9% | 76.1 / 3.6 | 31 | intergenic (‑46/‑236) | PP_1209/dps | cold‑shock protein/DNA‑binding stress protein |
| Reads supporting (aligned to +/- strand): ref base A (16/11); new base G (2/2); total (18/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 | |||||||||||
TCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTG > NC_002947/1388417‑1388690 | tCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAgc < 2:374092/150‑1 (MQ=255) ggCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCCCAGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAg > 1:37211/1‑150 (MQ=255) ggCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATgaga < 1:245293/127‑1 (MQ=255) ggCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATgaga > 2:245293/1‑127 (MQ=255) gCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATga < 2:470585/124‑1 (MQ=255) gCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATga > 1:470585/1‑124 (MQ=255) tGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCGGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGcc > 1:476640/1‑150 (MQ=255) tATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGcc > 1:467241/1‑150 (MQ=255) tGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTa < 1:300549/150‑1 (MQ=255) tGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTa > 2:300549/1‑150 (MQ=255) caAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAAt < 2:467241/150‑1 (MQ=255) aaaGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATg > 1:282335/1‑150 (MQ=255) aCGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGc > 1:138626/1‑150 (MQ=255) aCCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCCGCAATGA‑CAGTCCGCACGGGTGGc < 2:193736/150‑1 (MQ=255) aCCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGGTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGc > 2:326974/1‑150 (MQ=255) cAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGcac > 1:555213/1‑150 (MQ=255) tCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTTGGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTAttt > 1:344812/1‑150 (MQ=255) tCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTAttt > 2:10029/1‑150 (MQ=255) gAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACa < 2:282335/150‑1 (MQ=255) gTTGGCTAACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCg < 1:260604/150‑1 (MQ=255) ttGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGc < 2:555213/150‑1 (MQ=255) cACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCGGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTa < 2:476640/150‑1 (MQ=255) cTGTTGATAAGGCCGATCACAGGAAGAGCTGGCGGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCa < 2:162613/143‑1 (MQ=255) cTGTTGATAAGGCCGATCACAGGAAGAGCTGGCGGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCa > 1:162613/1‑143 (MQ=255) tAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGTACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCg > 1:122365/1‑150 (MQ=255) aGGCCGATCACAGGAAGCGCTGGCAGCACGGTGCGCATGAGATATAGCGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATCA‑CAGTCCGCACGGGTGGCACACTGCCCATTTAACACTAAAGCCGCAGCCTACTCAAACCGCa < 2:159566/150‑1 (MQ=255) ggCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAg > 1:51770/1‑150 (MQ=255) cGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGc > 1:469422/1‑129 (MQ=255) cGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGc < 2:469422/129‑1 (MQ=255) gATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCC‑GCAGGAAGCAGTCCGCACGGTTGGCACACTGCATATTTCCCCGTATCCCCATAGCCTACGCAAACCGCAGgccg > 1:434282/1‑150 (MQ=255) aTCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGgccgc > 1:325802/1‑150 (MQ=255) agcaCGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTg > 2:217381/1‑150 (MQ=255) | TCGCATCGGTTTTCAGGCTGGGTATGAGCGATAGCAGCAAAGCTGCCACGCCCGTCACCAGATGGACGATCTTGAACATGGGGTTGGCTCACTGTTGATAAGGCCGATCACAGGAAGAGCTGGCAGCACGGTGCGCATGAGATATAGAGCGCGAACACGTGGCAGGCCAGCCTATGCACCCGGCAATGA‑CAGTCCGCACGGGTGGCACACTGCCTATTTAACAGTAAAGCCGCAGCCTACTCAAACCGCAGGCCGCCCAGTGGGCAATGTATTG > NC_002947/1388417‑1388690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |