| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,900,038 | G→A | 23.5% | A212V (GCG→GTG) | PP_2553 ← | MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,900,038 | 0 | G | A | 23.5% | 24.9 / 4.4 | 17 | A212V (GCG→GTG) | PP_2553 | MFS transporter |
| Reads supporting (aligned to +/- strand): ref base G (5/8); new base A (2/2); total (7/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
GGCCGCACCGAAGATGGTGGCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGAAGCCTGCAATCAGCACGATGGCGCTCATCAGGAACGGAATGCGCCAGCCCCATTCGGTAAAGGCTTCGCTGGGCATGAAGTAA > NC_002947/2899893‑2900154 | ggCCGCACCGAAGATGGTGGCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCTCCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTgg < 1:478613/150‑1 (MQ=255) cGAAGATGGTGGCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGt > 2:44510/1‑150 (MQ=255) gAAGATGGTGGCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTg < 1:251650/150‑1 (MQ=255) ggtggCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTc < 2:296753/150‑1 (MQ=255) ccGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACACTGGGGTTTCGTGCACTTc > 1:238038/1‑139 (MQ=255) ccGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACACTGGGGTTTCGTGCACTTc < 2:238081/139‑1 (MQ=255) ccGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACACTGGGGTTTCGTGCACTTc < 2:238038/139‑1 (MQ=255) ccGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACACTGGGGTTTCGTGCACTTc > 1:238081/1‑139 (MQ=255) aTGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGAAGCCTGCAATCAGCACGATg > 1:337090/1‑150 (MQ=255) tGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGAAGCCTGCAATCAGCACGATgg < 2:318979/150‑1 (MQ=255) tCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGaa > 1:270645/1‑124 (MQ=255) tCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGaa < 2:270645/124‑1 (MQ=255) ttCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGgatga < 1:262839/103‑1 (MQ=255) ttCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGgatga > 2:262839/1‑103 (MQ=255) gCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTc < 2:103246/74‑1 (MQ=255) gCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTc > 1:103246/1‑74 (MQ=255) gCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGAAGCCTGCAATCAGCACGATGGCGCTCATCAGGAACGGAATGCGCCAGCCCCATTCGGTAAAGGCTTCGCTGGGCATGAAGTaa < 2:337090/150‑1 (MQ=255) | GGCCGCACCGAAGATGGTGGCAACGACCGGGATCACGTTCATCAGGGCCATGAACATCACCAGCACCATGTGCTTCCAGCTGTGGCGGAAGGCCTCGCTGATGGGCGACTTGGCAACCTTGTCCTGTTTCTCTTCTTGCACGAACGCTGGGGTTTCGTGCACTTCCTTACGGATGATGAAGCCTGCAATCAGCACGATGGCGCTCATCAGGAACGGAATGCGCCAGCCCCATTCGGTAAAGGCTTCGCTGGGCATGAAGTAA > NC_002947/2899893‑2900154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |