| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2429928 = | 26 (0.660) | 6 (0.200) | 6/200 | 3.2 | 21.6% | intergenic (+15/+98) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | 2430009 = | 24 (0.810) | intergenic (+96/+17) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2430100‑2429928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG > NC_002947/2430009‑2430143 GTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGC < 2:477941/150‑1 TACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTC > 1:465193/1‑150 CAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGC < 1:677972/150‑1 CTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGGCCAGGCGTTGTAGGAGCGGGTTCACCCGCGAAGAG < 1:234038/150‑1 CGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGC < 2:227041/122‑1 CGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGC > 1:227041/1‑122 GCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGG < 2:826331/137‑1 GCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGG > 1:826331/1‑137 GGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTG < 1:175809/88‑1 GGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTG > 2:175809/1‑88 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC > 2:179930/1‑78 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCC < 1:179930/78‑1 CTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAG > 2:592815/1‑150 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGAT < 1:592815/150‑1 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCA > 1:632496/1‑113 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCA < 2:632496/113‑1 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATC > 1:378060/1‑150 CTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAA > 1:89281/1‑150 GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCAT > 2:852042/1‑70 GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCAT < 1:852042/70‑1 CGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGC < 2:378060/150‑1 CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCGCCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG > 2:707938/1‑150 CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG > 1:105076/1‑150 GTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2430100‑2429928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG > NC_002947/2430009‑2430143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |