| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5759460 = | 14 (0.450) | 9 (0.380) | 8/206 | 1.7 | 36.2% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | 5759552 = | 21 (0.890) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTA > NC_002947/5759314‑5759605 | tGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GG < 1:230767‑M1/150‑1 (MQ=255) gACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTC > 2:547459‑M1/1‑150 (MQ=255) tgatgctgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttactcccggcGCCGggccct < 2:160212‑M1/10‑3 (MQ=255) gctgtcgccggtcaacttctacgccctgtacgcacaagaaatgcatcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccgttttcaagaaagctcctctcggcgcgcttttttgttgccggcGC‑GGGCCTCTTcgc > 1:207614‑M1/137‑150 (MQ=255) tgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgccgcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg > 1:161123‑M1/135‑150 (MQ=255) tgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg > 1:115724‑M1/135‑150 (MQ=255) tGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGG < 2:557038‑M1/150‑1 (MQ=255) tGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGG < 2:211595‑M1/150‑1 (MQ=255) gccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTaa < 2:553101‑M1/20‑1 (MQ=255) ggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAAcc < 2:116290‑M1/23‑1 (MQ=255) gtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAAccc < 1:145833‑M1/24‑1 (MQ=255) tcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg < 2:499313‑M1/16‑1 (MQ=255) tcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg > 1:499313‑M1/126‑141 (MQ=255) gCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGC < 2:411930‑M1/150‑1 (MQ=255) cttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTcgc < 2:751287‑M1/14‑1 (MQ=255) cttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTcgc > 1:751287‑M1/122‑135 (MQ=255) cctgcgcctgcCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTAC > 1:406024‑M1/1‑150 (MQ=255) ccGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg < 1:547459/150‑1 (MQ=255) ccGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAg < 1:76393/150‑1 (MQ=255) cGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACg < 2:529720/150‑1 (MQ=255) cGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCt < 2:158576/150‑1 (MQ=255) cGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACaggggattgcgccgttccctcggcctgc > 1:388695‑M1/1‑122 (MQ=255) gtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTg > 1:48483‑M1/90‑150 (MQ=255) gTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTA > 1:338348‑M1/1‑120 (MQ=255) gTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTA < 2:338348‑M1/120‑1 (MQ=255) gTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGGAAACGCGCTCCTACGCAGGCCGAGGGAACGTCGCAATCCCCTg < 1:425015‑M2/150‑2 (MQ=255) gAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagc < 2:406024‑M1/150‑37 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTgtaggagcgg > 2:617099‑M2/1‑140 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGCGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcgg < 2:388695‑M1/150‑39 (MQ=255) ccTGTCCAATATGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGGTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTgtaggagcggg > 1:277860‑M2/1‑139 (MQ=255) gTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTTCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGG < 2:345523‑M1/92‑1 (MQ=255) gTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGG > 1:345523‑M1/1‑92 (MQ=255) aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcggg > 2:682783‑M1/1‑104 (MQ=255) aaTACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcggg < 1:682783‑M1/143‑40 (MQ=255) tgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg < 2:158653‑M1/70‑1 (MQ=255) tgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg > 1:158653‑M1/62‑131 (MQ=255) ggTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcc < 1:641995‑M2/150‑30 (MQ=255) aCGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTgtaggagcgggtttaccc < 2:311199‑M2/135‑19 (MQ=255) aCGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTgtaggagcgggtttaccc > 1:311199‑M2/1‑117 (MQ=255) ccggtttcaagaaagcgcctctcggggcgcttttttgttgcctgtGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCg < 2:625040‑M1/69‑1 (MQ=255) ccggtttcaagaaagcgcctctcggggcgcttttttgttgcctgtGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCg > 1:625040‑M1/46‑114 (MQ=255) gTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGCGTGGCCTGTGC‑GGGCCTCTTCGCCGGTAAACCCGCTCCTACGCAGGCCGAGGGACCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa < 1:269643/150‑1 (MQ=255) aagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg > 1:429868‑M1/38‑53 (MQ=255) aagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCgg < 2:429868‑M1/16‑1 (MQ=255) aagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg < 2:447267‑M1/70‑1 (MQ=255) aagaaagcgcctctcggggcgcttttttgttgccggcGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg > 1:447267‑M1/38‑107 (MQ=255) gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCGGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGcaa < 1:730334/134‑1 (MQ=255) gAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGcaa > 2:730334/1‑134 (MQ=255) aaCGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCgag > 1:689273/1‑150 (MQ=255) agcgcctctcggggcgcttttttgttgcctgtGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGaa > 1:152671‑M1/33‑115 (MQ=255) agcgcctctcggggcgcttttttgttgcctgtGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGaa < 2:152671‑M1/83‑1 (MQ=255) gCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAGGCGCCCCGAGAGGCGCTTTCTTGaaa < 2:641995/150‑1 (MQ=255) gtgtTGCTTGGGC‑GGGCCGCTTGGAGGGTAACCCAGCTCCTACGCAGGTCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa < 2:425015/150‑1 (MQ=38) ttGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCgaga < 2:650826/126‑1 (MQ=255) ttGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCgaga > 1:650826/1‑126 (MQ=255) ttGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTa > 2:323838/1‑150 (MQ=255) cTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTa > 2:362658/1‑150 (MQ=255) | TGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGC‑GGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTA > NC_002947/5759314‑5759605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |