New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5903825	35 (1.140)	7 (0.250)	7/250	2.4	20.5%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903887	22 (0.770)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

GAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903740‑5904033                                                                                                                                                    |                                                                                                                                                   gAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtg                                                                                                                                                  <  2:711914‑M2/150‑3 (MQ=255)  ggtgctgcagccaacgcttcgcagccgcaggtcacggctgcggcgcaggtggctgcgtcggcctgacctggccccttcgcgggcatGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGc                                                                                                                                                 >  1:602966‑M1/87‑150 (MQ=255)    ggCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGGTCACCACAAACCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtgccc                                                                                                                                               <  1:195441‑M2/150‑6 (MQ=255)       tGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGGGCTGGAGCCATCGCGGGCATGCCGGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtgcccgcg                                                                                                                                            >  2:21975‑M2/1‑142 (MQ=255)         gATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtgcccgcgaa                                                                                                                                          <  2:751304‑M2/150‑11 (MQ=255)         gATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtgcccgcgaa                                                                                                                                          >  1:620246‑M2/1‑140 (MQ=255)            tGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAgg                                                                                                                                       <  1:711914/150‑1 (MQ=255)             ggTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGTGCGTGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAggg                                                                                                                                      <  1:609774/150‑1 (MQ=39)               tCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGccc                                                                                                                                    <  1:751304/150‑1 (MQ=255)                 aGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTGCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAg                                                                                                                                  >  1:298955/1‑150 (MQ=255)                      tATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAg                                                                                                                             <  1:726949/150‑1 (MQ=255)                        tCAGGGACTATCCACATTGGGATGCGGTATTGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGc                                                                                                                           <  1:363224/150‑1 (MQ=255)                               cTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCTAAAGGGCCAGGTCAGGCCGACGCa                                                                                                                    <  1:84983/150‑1 (MQ=255)                               cTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCa                                                                                                                    >  1:324587/1‑150 (MQ=255)                                tATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGGGGGTGTGCCCGCGAAAGGGc                                                                                                                                     >  1:453454/1‑132 (MQ=255)                                tATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc                                                                                                                                     <  2:453454/132‑1 (MQ=255)                                  tCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGcc                                                                                                                 <  2:324587/150‑1 (MQ=255)                                                      ggCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCGGCTCCCACAGGGCTCACCACAGCCCTGAAGGCTGTGGGGTCCCTGGGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGAc                                                                                             <  1:729837/150‑1 (MQ=255)                                                          ttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGc                                                                                         >  2:281955/1‑150 (MQ=255)                                                                  gTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGa                                                                                 >  1:711256/1‑150 (MQ=255)                                                                             ttCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatc                                                                      <  2:564892‑M2/150‑79 (MQ=255)                                                                                    gcacgcccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGCAGCCGTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAcc                                                               >  1:602966‑M2/65‑150 (MQ=255)                                                                                     cATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTACAGCAcc                                                               <  1:48836/149‑1 (MQ=255)                                                                                     cATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTACAGCAcc                                                               >  2:48836/1‑149 (MQ=255)                                                                                          ccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg                                                                         <  2:107570‑M2/76‑1 (MQ=255)                                                                                          ccgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg                                                                         >  1:107570‑M2/59‑134 (MQ=255)                                                                                             cTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCAtgcccgcgaaggctccagcaccgattcaaa                                                                                                                      >  2:223405‑M2/1‑56 (MQ=255)                                                                                             cTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCAtgcccgcgaaggctccagcaccgattcaaa                                                                                                                      <  1:223405‑M2/86‑31 (MQ=255)                                                                                             CTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGAt                                                      >  1:41789‑M1/1‑150 (MQ=255)                                                                                                ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGACCCTGTGGGAGCGGGCGtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctggtacttctgaccaatccagccctcaaggtattagc                                                   <  1:331117‑M2/150‑98 (MQ=255)                                                                                                CCACAGGGCTCACCACAACCGTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTGAGGCGGACGCGGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc                                                   <  1:89758‑M1/150‑1 (MQ=255)                                                                                                 cacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCGCCCGGAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc                                                  >  1:129888‑M2/52‑150 (MQ=255)                                                                                                 cacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCt                                                                                                 >  2:336002‑M2/52‑103 (MQ=255)                                                                                                 cacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCt                                                                                                 <  1:336002‑M2/52‑1 (MQ=255)                                                                                                 CACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc                                                  >  2:711256‑M1/1‑150 (MQ=255)                                                                                                  acagggacctcacagccttcagggttgtggtgagccctgtgggagcggggGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCct                                                 >  2:217804‑M2/51‑150 (MQ=255)                                                                                                   caGGGCTCACCACAACCCTGAAGGCTGTGACGTCACTCCGCATTAGATGCAGCGTGCTAAAGGGCCAGGGCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctg                                                >  1:694753/1‑150 (MQ=255)                                                                                                   CAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCa                                                                                                                              >  2:73186‑M1/1‑72 (MQ=255)                                                                                                   CAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCa                                                                                                                              <  1:73186‑M1/72‑1 (MQ=255)                                                                                                      ggCTCACCACAACCCTGAAGGCTGTGAGGCCCCTGTGGGAGCGGGCGtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggcaacaat                                             >  1:564892‑M2/1‑47 (MQ=255)                                                                                                       GCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGc                                                                                   <  2:135294‑M1/111‑1 (MQ=255)                                                                                                       GCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGc                                                                                   >  1:135294‑M1/1‑111 (MQ=255)                                                                                                           accacAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAcc                                                               >  1:485204/1‑127 (MQ=255)                                                                                                           accacAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAcc                                                               <  2:485204/127‑1 (MQ=255)                                                                                                                    cTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGACCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGcgac                               >  2:486705/1‑150 (MQ=255)                                                                                                                    cTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCAtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggcaaca                                               <  1:77591‑M2/134‑102 (MQ=255)                                                                                                                    cTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCAtgcccgcgaaggctccagcaccgattcaaagccataccgcatcccaatgtggatagtccctgatacttctgaccaatccagccctcaagggattggcaaca                                               >  2:77591‑M2/1‑33 (MQ=255)                                                                                                                              tgAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTc                     <  2:637519/150‑1 (MQ=255)                                                                                                                              tgAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTc                     >  1:177553/1‑150 (MQ=255)                                                                                                                                      ctgtgggagcgggcGTGCCCGCGACAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGGTTGACCTGCGGCTGCGAAGCGTTGGCTGAATCCGCCGCTTCGAGGGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTggc             >  2:209417‑M2/15‑150 (MQ=255)                                                                                                                                             agcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGaa      <  2:129888‑M2/143‑1 (MQ=255)                                                                                                                                              gcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAg     <  1:281955‑M2/144‑1 (MQ=255)                                                                                                                                                 ggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc  <  2:694753‑M2/147‑1 (MQ=255)                                                                                                                                                 ggcATGCCCGCGACGGGGCCAGGTCCGGCAGAAGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc  <  2:602966‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAC  >  NC_002947/5903740‑5904033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.