| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,460,269 | Δ1 bp | 12.1% | coding (136/1446 nt) | PP_3075 ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,460,269 | 0 | T | . | 12.1% | 91.5 / 8.4 | 33 | coding (136/1446 nt) | PP_3075 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (12/17); new base . (2/2); total (14/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.08e-01 | |||||||||||
CATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGG > NC_002947/3460120‑3460410 | cATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCgat < 2:125675/150‑1 (MQ=255)cATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCgat < 1:606990/150‑1 (MQ=255)cATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCgat < 1:485726/150‑1 (MQ=255) gCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTAGGCCAGGCCAAAGCGTCGGGCGTATCGTTCTTTCATTCTGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGaa < 2:84003/150‑1 (MQ=255) cGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACa > 2:77224/1‑150 (MQ=255) cACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCACAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACagcgagag > 2:118050/1‑148 (MQ=255) tGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGAt > 2:24413/1‑150 (MQ=255) gCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAg > 1:359875/1‑150 (MQ=255) ggCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGc < 1:24413/150‑1 (MQ=255) tGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGt < 2:359875/150‑1 (MQ=255) gCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTAc < 2:182192/150‑1 (MQ=255) gCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTggggg < 1:360330/150‑1 (MQ=255) cGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGCTGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGa < 1:617629/150‑1 (MQ=255) ccaAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctg > 1:241764/1‑150 (MQ=255) caAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgt > 2:477896/1‑150 (MQ=255) gTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgtc > 1:315483/1‑145 (MQ=255) gTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGgctgtcgctgtc < 2:315483/145‑1 (MQ=255) ttcATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGaa > 1:323172/1‑150 (MQ=255) cGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTg < 2:323172/150‑1 (MQ=255) gATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg > 1:574727/1‑150 (MQ=255) gATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTgg > 1:573915/1‑150 (MQ=255) aTGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGc < 2:574727/150‑1 (MQ=255) aTGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGc < 2:573915/150‑1 (MQ=255) cTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGccc < 2:729347/150‑1 (MQ=255) tGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCcg > 1:377592/1‑150 (MQ=255) ggCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCcgc < 1:477896/150‑1 (MQ=255) ggCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGAGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCagc < 1:118050/150‑1 (MQ=255) acgaTCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggc > 1:723739/1‑150 (MQ=255) cACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggccaggc < 2:241764/150‑1 (MQ=255) cACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAaggccaggc < 1:77224/150‑1 (MQ=255) cGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCa < 2:305678/150‑1 (MQ=255) cGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCa < 2:377592/150‑1 (MQ=255) gcTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACaa < 1:751113/113‑1 (MQ=255) gcTGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACaa > 2:751113/2‑114 (MQ=255) tGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGACAAGGCCAGGCCTGAAAACTCATCGTCgg > 2:349312/1‑149 (MQ=255) tGTTCGA‑GATCATCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCgg < 1:349312/149‑1 (MQ=255) | CATCAGGCTGCCGGGGATCACTGTTTCGCACGGCTGGCCGATGGCACTGGCAGCGTCGGCCAGGCCAAAGCGTCGGGCGTAGCGTTCGTTCATCCAGACGATGCGTGCCTGGCGGTCGACGATCACCGTGCCCTCGCTGGACTGTTCGATGATC‑TCGAACAGCGAGCGGATCGCCAGTTGCCGTACCTGGGGGTAGTCCTTGAGGCTGTCGCTGTCGTGCATGGGTGAACATCCTGAATCATGTATTGGCACAAGCCCGCGAAAAGGCCAGGCCTGAAAACTCATCGTCGG > NC_002947/3460120‑3460410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |