New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	295700 =	47 (1.670)	8 (0.320)	8/218	NT	15.3%	intergenic (+47/+95)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator
	?	NC_002947	295759 =	47 (1.880)					intergenic (+106/+36)	PP_0241/PP_0242	transporter/TetR family transcriptional regulator

CAAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/295861‑295700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  NC_002947/295759‑295906                                                                                                                                                                                                                                                                                                                        CAAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCT                                                                                                                                                                  >  2:275716/1‑150  AAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTG                                                                                                                                                                 >  2:717995/1‑150    GCGGGTGTTCGAAGCGTATCTGGGGTTATATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTG                                                                                                                                                               >  1:696892/1‑150     CGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGATCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGG                                                                                                                                                              <  1:82852/150‑1         TGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGC                                                                                                                                                          <  2:737879/150‑1           TTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAtgtg                                                                                                                                                        <  2:667664/150‑5            TCGAAGCGTATCTGGAGTTTTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGG                                                                                                                                                       <  1:449803/150‑1                                                                                             TTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCTGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACGCCA                                                                      >  1:299053/1‑150                                                                                                         CCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGA                                                          >  2:147941/1‑150                                                                                                          CCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGGACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAA                                                         >  1:412065/1‑150                                                                                                                CCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCG                                                   >  1:108462/1‑150                                                                                                                   CAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAG                                                                                                              <  2:193517/88‑1                                                                                                                   CAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAG                                                                                                              >  1:193517/1‑88                                                                                                                                              CGAGTACCTGTGGGAGCGGGCGTGCCGGCGAAGGGCTGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGAT                     <  2:299053/150‑1                                                                                                                                               GAGTACCTGTGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATC                    <  2:108462/150‑1                                                                                                                                                        TGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGG                                                                                                 >  1:446842/1‑64                                                                                                                                                        TGGGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGG                                                                                                 <  2:446842/64‑1                                                                                                                                                          GGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATAC                                                                 <  1:554237/94‑1                                                                                                                                                          GGAGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATAC                                                                 >  2:554237/1‑94                                                                                                                                                            AGCGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCT       <  2:232956/150‑1                                                                                                                                                              CGGGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGC     <  1:147941/150‑1                                                                                                                                                                GGCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCAC   >  2:99731/1‑150                                                                                                                                                                 GCTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATACGCGGGGTGATCGCCTCGTGCAGCTGCACC  <  2:336163/150‑1                                                                                                                                                                                                                                                                                                                        CAAGCGGGTGTTCGAAGCGTATCTGGGGTTGTATCTGCCGCCGTTTCTGGCCAAGCGTTCCAGCTGAGAAATCTGGGGCCGCTTGGCGGCCCTTCGCGGGCAAGCCCGCTCCCACAGAGCCCGCGCGCACCCTGGAGCTTGCGAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/295861‑295700 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTTGCCCGCGAAGGGCCGCCAAGCGGCCCCAGATTTCTCAGCTGGAACGCTTGGCCAGAAACGGCGGCAGATACAACCCCAGATACGCTTCGAACACCCGCTTGCCTTCCTCGGCCATGCGCGGGGTGATCGCCTCGTGCAGCTGCACC  >  NC_002947/295759‑295906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.