New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 204885326 (0.920)9 (0.370) 7/212 NT 27.5% intergenic (+49/+90) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
?NC_002947 = 2048910 25 (1.030)intergenic (+106/+33) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein

TATGCCTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2048688‑2048853
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgtgggagcgggcgAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGGGTGGCTGC  <  NC_002947/2048910‑2048770
                                                                                                                                                                                                                                                                                                                   
TATGCCTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATC                                                                                                                                                               >  1:65477/1‑150
     CTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCGATCCTTGT                                                                                                                                                          <  2:427134/150‑1
     CTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGT                                                                                                                                                          >  1:259698/1‑150
           CCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGC                                                                                                                                                    >  1:304344/1‑150
           CCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGC                                                                                                                                                    >  1:309255/1‑150
           CCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGC                                                                                                                                                    >  2:28505/1‑150
            CATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCG                                                                                                                                                   <  1:418566/150‑1
             ATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGG                                                                                                                                                  >  1:568110/1‑150
              TGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGG                                                                                                                                                 >  2:196040/1‑150
                    GCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATTTGCCGATGGTGGGATGAAAAACGACCGTTGTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCC                                                                                                                                           >  1:731112/1‑150
                                                TACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGG                                                                                                                                                  >  2:92311/1‑115
                                                TACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGG                                                                                                                                                  <  1:92311/115‑1
                                                   CCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGG                                                                                                            >  2:211857/1‑150
                                                                          GCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCAC                                                                                     <  2:731112/150‑1
                                                                          GCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCAC                                                                                     <  1:211857/150‑1
                                                                                        ACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGC                                                                                   <  1:334720/138‑1
                                                                                        ACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGC                                                                                   >  2:334720/1‑138
                                                                                            GCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCAC                                                                                     >  1:445053/1‑132
                                                                                            GCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCAC                                                                                     <  2:445053/132‑1
                                                                                                                      AACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCC                                                                           <  2:53865/116‑1
                                                                                                                      AACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCC                                                                           >  1:53865/1‑116
                                                                                                                                                     CCTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGG          <  2:416239/150‑1
                                                                                                                                                      CTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATC                        <  2:443261/135‑1
                                                                                                                                                      CTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATC                        >  1:443261/1‑135
                                                                                                                                                      CTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTC                                                                                             >  2:69074/1‑66
                                                                                                                                                      CTTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTC                                                                                             <  1:69074/66‑1
                                                                                                                                                       TTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACCGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGGGT        >  2:304344/1‑150
                                                                                                                                                       TTGTGGGAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGGGT        <  2:585313/150‑1
                                                                                                                                                             GAGCGGGCGAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGGGTGGCTGC  <  2:664522/150‑1
                                                                                                                                                                                                                                                                                                                   
TATGCCTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2048688‑2048853
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgtgggagcgggcgAGCCCGCGAAGCAGGCACCGCGGTGGTTGGCACGGGCTGCGCCCGTGTTCGCGGGCACGCCCGCTCCCACAAGGATTGCGCAAGCGCCTGGAAAACAGGTCGGTTTTCAGCCCACCATCGGCACATGCCGCGGGTGGCTGC  <  NC_002947/2048910‑2048770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.