New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4957603 =	40 (1.420)	4 (0.160)	4/216	NT	10.2%	intergenic (‑41/+122)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein
	?	NC_002947	4957693 =	35 (1.420)					intergenic (‑131/+32)	fliH/fliG	flagellar assembly protein FliH/flagellar motor switch protein

TCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4957762‑4957603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaaAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCACGTCGCTGACCCGTACCGG  >  NC_002947/4957693‑4957841                                                                                                                                                                                                                                                                                                                       TCGTGCTCGGCGGGAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCAGAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCTGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCC                                                                                                                                                                 <  2:51570/150‑1    TGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCT                                                                                                                                                              <  2:699103/150‑1     GCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTC                                                                                                                                                             <  1:688910/150‑1           CGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA                                                                                                                                                       <  1:30929/150‑1           CGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA                                                                                                                                                       <  1:441690/150‑1                                                                                         CCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAA                                                                                                                           >  1:214389/1‑100                                                                                         CCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAA                                                                                                                           <  2:214389/100‑1                                                                                             GAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCT                                                                     >  1:692001/1‑150                                                                                                   GTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTAAACCCTCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACATTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCA                                                               >  1:324259/1‑150                                                                                                                                                  AACCCGCTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCCTTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCACGTCG                >  2:183774/1‑150                                                                                                                                                        CTCCTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCACGTCGCTGACC          <  1:699103/150‑1                                                                                                                                                           CTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTC                       >  1:216783/1‑134                                                                                                                                                           CTACAAAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTC                       <  2:216783/134‑1                                                                                                                                                                AAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCACGTCGCTGACCCGTACCGG  <  1:183774/150‑1                                                                                                                                                                                                                                                                                                                       TCGTGCTCGGCGGCAAGGGCGCCGAGGAAATGATCTAAGGTATTCGCGATCCCATAGCCGACGCCGCCTTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4957762‑4957603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaaAAGGCGGCGTCGGCTATGGGATCGCGAATACCTTAGATCATTTCCTCGGCGCCCTTGCCGCCGAGCACGATCTCGCCGGCCTCGGCCATGCGCCGGGCAATGGTGAGGATTTCTTTCTGCGCGGTTTCCACGTCGCTGACCCGTACCGG  >  NC_002947/4957693‑4957841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.