| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 202378 | 27 (0.960) | 6 (0.320) +AGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCAT |
4/164 | NT | 19.4% | coding (7884/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 217036 | 48 (1.700) | coding (22542/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
AACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGC > NC_002947/202241‑202525 | aaCGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTAc > 1:320384/1‑150 (MQ=35) cTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCa < 2:351040/150‑1 (MQ=35) ttCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTAc > 2:335578/1‑145 (MQ=35) ttCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTAc < 1:335578/145‑1 (MQ=35) ccGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGca < 2:113429/150‑1 (MQ=35) cGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcac > 1:413088/1‑150 (MQ=35) ccTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACcgt > 2:64034/1‑150 (MQ=38) ccTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACcgt > 1:223224/1‑150 (MQ=38) cTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCGCCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTc < 2:712401/113‑1 (MQ=255) cTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCGCCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTc > 1:712401/1‑113 (MQ=255) gacgaGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGc > 1:115838/1‑138 (MQ=37) gacgaGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGc < 2:115838/138‑1 (MQ=37) gaGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTg < 2:413088/150‑1 (MQ=38) gtggCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGAc < 1:495873/126‑1 (MQ=35) gtggCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGAc > 2:495873/1‑126 (MQ=35) aCCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCg < 1:64034/150‑1 (MQ=32) ccTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGcc > 1:135929/1‑150 (MQ=32) cTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCa > 1:323367/1‑150 (MQ=32) cGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTg < 2:207362/150‑1 (MQ=32) ggTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACagtgcattgaccttcacgctgagtgacggcaaaaccgtcatcaccgtgccgttggccggcacggtgatgacggtttt < 2:407233‑M1/150‑78 (MQ=255) gTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACt > 2:546141/1‑85 (MQ=33) gTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACt < 1:546141/85‑1 (MQ=33) gTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacggcaaaaccgtcatcacggtgccgttggccggcacggtgatgacggttttg < 1:430774‑M1/150‑79 (MQ=255) tCACCGAAGGCGGTGAGATCACCTACACCATAACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTTGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCaa > 1:428324/1‑150 (MQ=14) tGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACaa > 1:10646/1‑150 (MQ=34) aTCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacggcaaaaccgtcatcaccgtgccgttggccggcacggtgatgacggtttt > 2:567573‑M1/1‑54 (MQ=255) aTCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacggcaaaaccgtcatcaccgtgccgttggccggcacggtgatgacggtttt < 1:567573‑M1/131‑78 (MQ=255) cTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGt > 1:394215/1‑150 (MQ=35) tACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTc < 2:223224/150‑1 (MQ=35) cATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCAc > 1:612703/1‑150 (MQ=34) tGACCAACAAAGACGGTCTGCCGATCAACAACCACGCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACgcgc < 2:653143/150‑1 (MQ=21) caacaaAGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacggcaaaaccgtcatcacggtgccgttggccggcacggtgat < 1:284186‑M1/99‑69 (MQ=255) caacaaAGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacggcaaaaccgtcatcacggtgccgttggccggcacggtgat > 2:284186‑M1/1‑31 (MQ=255) caacaaAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCggt < 2:10646/150‑1 (MQ=35) aaaGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacg > 2:130785‑M1/1‑27 (MQ=255) aaaGACGGTCTGCCGATCAACAACCACagtgcattgaccttcacgctgagcgacg < 1:130785‑M1/55‑29 (MQ=255) gACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAAt < 2:752048/150‑1 (MQ=35) acCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCCCCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcg > 2:302552/1‑150 (MQ=38) acCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcg > 1:168871/1‑150 (MQ=39) cACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCCCTGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAgcggc < 1:81012/150‑1 (MQ=255) | AACGCTTCGGTTCAAGTGACCGACACCCTCGACGAGGTGGTGGCGAAGCTGACCGCGACCCCTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAACAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACCGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGCAACCGCCCCGGACAACGTCTATGTCGGCACCAACGCGCCGGTGGTCAATGCCATCGACGCCGTCAGCGGC > NC_002947/202241‑202525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |