New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2101524 =	31 (1.100)	4 (0.160)	3/222	NT	12.1%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101568 =	30 (1.180)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

CCGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGG  >  NC_002947/2101376‑2101669                                                                                                                                                     |                                                                                                                                                  ccGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCg                                                                                                                                                  <  1:335114/150‑1 (MQ=255)            ggACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCt                                                                                                                                       >  1:633034/1‑150 (MQ=255)             gACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCtt                                                                                                                                      <  1:10140/150‑1 (MQ=255)                        gATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCggg                                                                                                                           <  2:633034/150‑1 (MQ=255)                          ttGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGtt                                                                                                                         <  2:231565/150‑1 (MQ=255)                                  ctggacctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCcgcg                                                                                                                 >  2:156370/1‑150 (MQ=255)                                       cctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGACACCATTGGCGGCGATATTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAagag                                                                                                            >  1:655704/1‑150 (MQ=255)                                                 ccGACGGTCGGGCGGTTCAGCGAGGCGGGGCAGGTGGGGCTGGAGCGGTTGGTGGCGATCTTTCTGGCGTTGACTGCATGCTGATCAATGTTGGCTGAGTCGGACTATTTGGTTGTAGGAGCGGGTTTGCAAGGGAAGAGGCGGGCGCAg                                                                                                  >  2:219520/1‑150 (MQ=255)                                                 ccGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAg                                                                                                  >  1:2583/1‑150 (MQ=255)                                                       gTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAAc                                                                                            <  1:156370/150‑1 (MQ=255)                                                                      gAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCgg                                                                                                                            <  1:102893/103‑1 (MQ=255)                                                                      gAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCgg                                                                                                                            >  2:102893/1‑103 (MQ=255)                                                                            gACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTa                                                                                <  2:703103/141‑1 (MQ=255)                                                                            gACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTa                                                                                >  1:703103/1‑141 (MQ=255)                                                                            gACCAGGTCGGTCTGGAGCGGTTGCCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGACTCGGCCTCTTCGCTTGTAGGACCGGGTTTANCCGCGAAGANGCCGGCACAGGTTAACCAATCAGTCGTAGATCACctt                                                                       <  1:219520/150‑1 (MQ=255)                                                                             aCCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACcttc                                                                      >  1:625816/1‑150 (MQ=255)                                                                             aCCAGGTGGGGCTGGAGCGGTTGGCGGCGATCGTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACcttc                                                                      <  2:38377/150‑1 (MQ=255)                                                                                aGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAAt                                                                                        >  2:216034/1‑129 (MQ=255)                                                                                aGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAAt                                                                                        <  1:216034/129‑1 (MQ=255)                                                                                           gAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTa                                                                                                                       >  2:141855/1‑87 (MQ=255)                                                                                           gAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTa                                                                                                                       <  1:141855/87‑1 (MQ=255)                                                                                                             tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAg                                      <  2:655704/150‑1 (MQ=255)                                                                                                                 tGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTa                                                                                                                                   >  1:295963/1‑53 (MQ=255)                                                                                                                 tGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTa                                                                                                                                   <  2:295963/53‑1 (MQ=255)                                                                                                                         actgactgCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTa                                                                                >  1:438556/1‑96 (MQ=255)                                                                                                                         actgactgCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTa                                                                                <  2:438556/96‑1 (MQ=255)                                                                                                                             actgCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCg                      >  2:100413/1‑150 (MQ=255)                                                                                                                               tgctgATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGtt                    >  1:326806/1‑150 (MQ=255)                                                                                                                                   gATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGc                >  2:632850/1‑150 (MQ=255)                                                                                                                                        aTGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGCGGCCGGCACAGGTTAAc                                                                                            <  2:384826/69‑1 (MQ=255)                                                                                                                                        aTGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAAc                                                                                            >  1:384826/1‑69 (MQ=255)                                                                                                                                             gCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTg      >  1:564691/1‑150 (MQ=255)                                                                                                                                                 gAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGTCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCgg  <  1:11526/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAGTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGG  >  NC_002947/2101376‑2101669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.