New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2783220 =	21 (0.750)	4 (0.150)	4/240	NT	14.4%	coding (246/927 nt)	PP_2436	LysR family transcriptional regulator
	?	NC_002947	2783251 =	27 (0.980)					coding (215/927 nt)	PP_2436	LysR family transcriptional regulator

AGGAAGCTTTCGATCATGACTGCCGGCGCCAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCATTGGACACTGCCGGCTG  >  NC_002947/2783071‑2783366                                                                                                                                                      |                                                                                                                                                    atgacccgcgccgggcagatcgtcggcattacccagccggcagtgtccaatgccctgtcgcgcctgcgcgaaaccttcaatgacccgctgttcgtgcgtaccgcgcaaggcatggtgcccacacccatggcgcagaacatcatcggccct                                                                                                                                                     <  1:144842‑M1/1‑1 (MQ=255) aGGAAGCTTTCGATCATGACTGCCGGCGCCAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGGCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGAt                                                                                                                                                     >  1:300748/1‑150 (MQ=255)  ggAAGCTTTCGATCATGACTGCCGGCGCCAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATg                                                                                                                                                    <  1:247033/150‑1 (MQ=255)              tCATGACTGCCGGCGCCAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAAcagcg                                                                                                                                        >  1:460096/1‑150 (MQ=255)                             ccAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCGTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGca                                                                                                                        <  2:226704/150‑1 (MQ=255)                                 gcggcgCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAgg                                                                                                                    >  2:560968/1‑150 (MQ=255)                                    gcgcAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGcc                                                                                                                 <  1:569837/150‑1 (MQ=255)                                    gcgcAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGGCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGcc                                                                                                                 >  2:144842/1‑150 (MQ=255)                                         ggCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCgatga                                                                                                            >  1:303833/1‑150 (MQ=255)                                                 aaCAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTgc                                                                                                    <  2:303833/150‑1 (MQ=255)                                                       ggcggcAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATg                                                                                              <  2:204830/150‑1 (MQ=255)                                                                        cTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGcc                                                                             <  2:302018/150‑1 (MQ=255)                                                                                 gtcggtcATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGt                                                                    <  1:234405/150‑1 (MQ=255)                                                                                 gtcggtcATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑CTGGCGGAGAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGt                                                                    <  1:280418/150‑1 (MQ=255)                                                                                          gCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGaa                                                           >  2:183437/1‑150 (MQ=255)                                                                                                   gAAGGTCTTGTTGGCCTGCTGCGGGTTGAAAGTGCGGCGTTCCTGCACCGATGTCGGGAACAGCGCCAGAGC‑GTTGCGCACAGGGCCGATGATGTTGTGCGCCATGGGGGTGGGCACCATGCCTTGTGCGGTACGCACGAAAAGCGGGta                                                  >  2:365779/1‑149 (MQ=255)                                                                                                      ggTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCAtt                                               >  2:298972/1‑150 (MQ=255)                                                                                                      cgcgcaaggcatggtgcccacacccatggcgcagaacatcatcggcccTGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAg                                                                                                                     <  2:732259‑M1/32‑1 (MQ=255)                                                                                                      cgcgcaaggcatggtgcccacacccatggcgcagaacatcatcggcccTGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAg                                                                                                                     >  1:732259‑M1/49‑80 (MQ=255)                                                                                                         cTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGaa                                            <  1:162302/150‑1 (MQ=255)                                                                                                           tgttgGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAgg                                          <  2:193180/150‑1 (MQ=255)                                                                                                                               aaCGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAgg                      >  1:675320/1‑150 (MQ=255)                                                                                                                                 cGTGCGCTTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCCTGCGCGaaacctt                    <  1:575993/150‑7 (MQ=255)                                                                                                                                  gTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCa                   >  1:522495/1‑150 (MQ=255)                                                                                                                                    gCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCAtt                 <  2:675320/150‑1 (MQ=255)                                                                                                                                       gCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCATTGGa              >  2:646280/1‑150 (MQ=255)                                                                                                                                           atcatcggcccTGTGCGCAAC‑GCGCTGGCGCTGTTGCGGACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCAtt                 >  2:255842‑M1/12‑143 (MQ=255)                                                                                                                                           atcatcggcccTGTGCGCAAC‑GCGCTGGCGCTGTTGCGGACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCAtt                 <  1:255842‑M1/132‑1 (MQ=255)                                                                                                                                                 aCCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCtt                                                                           <  2:129288/79‑1 (MQ=255)                                                                                                                                                 aCCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCtt                                                                           >  1:129288/1‑79 (MQ=255)                                                                                                                                                   cGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCATTGGACACTGCCGGCTg  <  1:298972/150‑1 (MQ=255)                                                                                                                                                   cGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGGCATTGAAGGTTTCGCGCAGGCGCGACAGGGCATTGGACACTGCCGGCTg  >  1:315635/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    AGGAAGCTTTCGATCATGACTGCCGGCGCCAGGCGGCGCAGGCGCTGGAACAGCGGCGGCAAGATGACCGCCTCGGTCAGGTCGGTCATGCTGATGCGGAAGGTCTTGTTGGCCTGCTGCGGGTTGAACGTGCGGCTTTCCTGCACCGATGTCCGCAACAGCGCCAGCGC‑GTTGCGCACAGGGCCGATGATGTTCTGCGCCATGGGTGTGGGCACCATGCCTTGCGCGGTACGCACGAACAGCGGGTCATTGAAGGTTTCGCGCAGGCGCGACAGGGCATTGGACACTGCCGGCTG  >  NC_002947/2783071‑2783366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.